LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g0014	ATGGCGAAACCTAAAGAAGAGAAATCAGACGATCTAGAAATCACCTCAATCGGAGCTCTGCACAAAGGTCCCTGGGACAAGAAGTACTGGAGCAGCTCTAGGGGTAAAGACCGCTATCCTTATCCAGTCGGGTACCAAGCTCTTCGGACTCATAATGGGATCAGATATAAGATGGAAATCCATGAAGGTCCCAAAGGGCCTTTATTTGTGATCATATCTGCTGATGGAATCTTGTGTTCTGGGCAAACTCCAGATATTGCATGGGAGATCTTTCAAAAGAAAGGCTGCCCTCGTTTAAAGACATTGCATGGGAAGAGACTTTCATGCAAGATAGATGGTGTGGAGTTCTTTGGGTTCAGAAATCCATTTGTCCAGCGGTTACTTCGGGAACTGGTGGCAAACGTCAATGGAACAGCAGAACAGACTTTGCTATCAGCCAGCTTCTGTAATAGAGCATCTGGAGCAGAGAATGATACACGACTTCCAGATTCATGTACATATCCTGATCTGCTACCATATTTGGAGAAACCACAGACTACAGGGAAGAGAAGTAGAAAACAGAAAAATATAAATATGAAGTCGATTAGTGGGTCTGCCCACAAAAGACTTCGACCTCGAGAGCTTACAGATAATTCTGTTGCTTCAAGTTCCAGACAAAGGAATCGCAATGGTGAGTATTCCTTGACTTCTTCTGCTCTAATGATGAATATGACAGTTGTAAGCATCCAGTTGAGCAAAAATCTGAATCCTTTTCAGCCAAAGATGGTTTGCCTTTGGAAACTGTTGGCCTTTGTGATCATCTTAGAGAGGAAGCCCTCATCCTCCAAGAGGAGGGAAAGCTTAAACATTCTTAATTTCTCACAGCTTGATAGGTCAAAACATATCAAGGTGCAAGGGCTCGGTTACTCAACACCAATAGAAGACAACAACATGGAAACCATATTTCCAAAGAGTTCTCAAGGTTTCAGTAATGTGGATCATTGTGCTCCTGACACCTTAGATCATATGCAAGATAATACTTCTGCTTATGCTTCTACTGCTCATAAGGAAGGTCCTGACAATGTGAAAGATGAGCTAACTGCAGCTGACATGACCATTTTTGAAGGTTCAGTAACTGAATCTCACCTGGAAGGAGAAGTGGGCACTTATACTTCAAATGGAAGTTCGGAAAGAAGTGATTTTGATTCAGTTGGTCAGGAAGTAGCCAAGTCAATGATGACAGTTCTACTTCCACAAGCACTTCCCCTGCTCAAGGAGACCTCAAGGAAGAAAAAGGCAACAAACAACCATTTGGGACTTTCTTTCTATAGAGCAGAATCTCTAGATGAAAACAGTGGAGCTTGCCCCATTGTGAATAATTCCCCTGTGGAAATGGAGGAAAAGGTGCAAACGTTTAGGAGAGATTTTGATCCAGTTATCCCAAGTTTTGAACATGTCAAATCTGTTATTCCCGACAGTTTCGAGGATGATCAATGTGGACATGATTCAGCTAATGGACCACTGCTCTTTTCTGATATTGCTGGAGCTGATCAGGCTTCTTTTGATAAAGACACGTGTGCTTGTGACACTTTGGGACAATTTATCAATGTTGATGCGTGGAAGGAGTCATCTGTTTGTCATGTTGAAACCGGTGAGAGAAAAGATGGTTTCTCATGCAGTAAAGCAAATGTGGCTTCAAAGTTGGACGAGAACTCCATCCACCATGGAATTCTTTCTGTGGAAAGAGAAAAGACTTTGCTTGATTATACAAGTGGTGCTAACACAAAGTGCATGGTGAGTTCTGTTCAAATATCAGAGCAAAGCATCAGTAGTAAAATGGATGGTGCTGAAGCTGGTAATCAAATCTCAGATGTAGCTCCTTTAACAAGAAAATACAATGGTCTCCTCTCAGAAAGTATCATATACAGAAACTTTGGAGATGATTGCATCCTTGATGCTTATCCTACAGTGGGACCTTTACTTGCTGCAGAAATTCATCAAGTTAGTTCTTCTGCTAGCAGCCCAGATAAAAAAGTTCTATTTAGTCCTGAAGTGAAGCTTGAAGGGCAGCACTACAATTTAAATACAGAGAAAATTGCTCTTAACCCTGAAGAAAGTTGTCAAGCCTACATTGACAAGAAGCTTGTTGAGCAACAGAACCTTGTAAAGTTAAACAGATCTGTTCAGAAAGGAGGAACAAGTTTCGGTGAGAATAACATGTCTAATGCCGAGGAAGTTCAAGCTGGTACAAACTTGAAGGCCCACATTAAGATGGAGGTTAAGCACGATCTAGTGGGCAACACTGAGCTTGTGGGATGCTATGTCCACCCCATGCCTGTTTTGTCAGTGTTATTGAACACAAGAGAGGATGAAATCCATATTTGTGTCTTATGTGGCCTTTTGGTGGATAAGGACACAATCTTGTTTATTTACAAAGTTACAATTAAAGAACCAAGGTTGCAGAGCCCTACTTTTGTTGGTTACACGCCAATTATATTGCCAACTCTAAAGGACAGAAGTGGTGGAGAGGTTGCATTGGACAGATTTGGTTTGCAATTCACTCCAGATGGGCAGTCCCTTGTTTTACTAAACAGTATAAAAACACCTTATTGCCGGGAACAGAAGATCCCCTGTCTCTGCTCTGCATGTAAGTTGGAATGCTTTGAGGAGAATGCAATAAAGATTGTGCAAATAAAACTTGGTTTTCTTTCAGTTGTGGAAAAATTGAAAACAGTTGACAGTGTTCAATGTATATTAGTCTGTGAACCGAACCATCTTGTTGCTGTTGAAGAGAGTGGGAGACTTCATGTATGGGTCATGAATTCAACATGGAGTGTACAGACAGAGGACTTTATTATACCAACTTATGATTGTGTATCTCCTTGCATAGTTGAGTTGAAGAGAATTCCAAAGTGTGCTCCTTTGGTCGTTGGTCATCATGGTTTTGGGGAATTTAGTTTATGGGACATTTCCCAACGCATCCTCATATCAAGGTTCGCAATGCCAAGCATTTCAATTTTCGAGTTCATTCCAATCAGCTTGTTTAGTTTCCAAAGTGAGGTTCCTCTTTCCAGCAATCCTGATGTGGATTTGCACATAAACAAAATAATGGCTGCAACAAAAATGTGGTTCTCAAAGCACAATGAAAATTACACCTTTCTTCCATTAGGGGGGGAAAGCATTGCTGTGTGGCTTCTTGTTTCAACTCTTTCTGACTCTGACACTCAGCATGACAATCAAATGAATGATTGCCAAACAAATCCAGTTGGATGGTGGAGACTAGCTCTCCTGGTGAAAAATATGGTCATCCTGGGAAGTGCATTAGATCCAAGGTGCTTTCTAGTGTTTTAA	3330	0.412	MAKPKEEKSDDLEITSIGALHKGPWDKKYWSSSRGKDRYPYPVGYQALRTHNGIRYKMEIHEGPKGPLFVIISADGILCSGQTPDIAWEIFQKKGCPRLKTLHGKRLSCKIDGVEFFGFRNPFVQRLLRELVANVNGTAEQTLLSASFCNRASGAENDTRLPDSCTYPDLLPYLEKPQTTGKRSRKQKNINMKSISGSAHKRLRPRELTDNSVASSSRQRNRNGEYSLTSSALMMNMTVVSIQLSKNLNPFQPKMVCLWKLLAFVIILERKPSSSKRRESLNILNFSQLDRSKHIKVQGLGYSTPIEDNNMETIFPKSSQGFSNVDHCAPDTLDHMQDNTSAYASTAHKEGPDNVKDELTAADMTIFEGSVTESHLEGEVGTYTSNGSSERSDFDSVGQEVAKSMMTVLLPQALPLLKETSRKKKATNNHLGLSFYRAESLDENSGACPIVNNSPVEMEEKVQTFRRDFDPVIPSFEHVKSVIPDSFEDDQCGHDSANGPLLFSDIAGADQASFDKDTCACDTLGQFINVDAWKESSVCHVETGERKDGFSCSKANVASKLDENSIHHGILSVEREKTLLDYTSGANTKCMVSSVQISEQSISSKMDGAEAGNQISDVAPLTRKYNGLLSESIIYRNFGDDCILDAYPTVGPLLAAEIHQVSSSASSPDKKVLFSPEVKLEGQHYNLNTEKIALNPEESCQAYIDKKLVEQQNLVKLNRSVQKGGTSFGENNMSNAEEVQAGTNLKAHIKMEVKHDLVGNTELVGCYVHPMPVLSVLLNTREDEIHICVLCGLLVDKDTILFIYKVTIKEPRLQSPTFVGYTPIILPTLKDRSGGEVALDRFGLQFTPDGQSLVLLNSIKTPYCREQKIPCLCSACKLECFEENAIKIVQIKLGFLSVVEKLKTVDSVQCILVCEPNHLVAVEESGRLHVWVMNSTWSVQTEDFIIPTYDCVSPCIVELKRIPKCAPLVVGHHGFGEFSLWDISQRILISRFAMPSISIFEFIPISLFSFQSEVPLSSNPDVDLHINKIMAATKMWFSKHNENYTFLPLGGESIAVWLLVSTLSDSDTQHDNQMNDCQTNPVGWWRLALLVKNMVILGSALDPRCFLVF*	1110

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g0014	1109	MobiDBLite	consensus disorder prediction	209	227	-	-
	Vvi1g0014	1109	PANTHER	TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1	1	1104	IPR040092	-
	Vvi1g0014	1109	Gene3D	-	8	135	-	-
	Vvi1g0014	1109	ProSiteProfiles	FYR domain FYRN motif profile.	4	63	IPR003888	GO:0005634
	Vvi1g0014	1109	ProSiteProfiles	FYR domain FYRC motif profile.	64	144	IPR003889	GO:0005634
	Vvi1g0014	1109	MobiDBLite	consensus disorder prediction	172	227	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g0014	Vvi-Chr1	246096	256109	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi1g0014	-		-	vvi:100268093	2061.96