Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0012 ATGAAAGAGATCATTTCTTTTTCTTTTTTTCTTTTTTTTCTTTTTTCCTTTTTTGAATCGTTTAGGCATTTATCTGGTAACATATTCTCTGCAAATTTGGATGCTGTTCTACTGATGGAGTCTTGGAGCCATGCCTTAGAAAAGAAGATGTTTTTGTATTCTGAAGAAATGGATTTAACAACTGATGCTGTTGGGAGAAGTAGAAAGTTGCTAACAGGATGGGACATGAGAACCCCTTTTAATTTTGAAAATGATGGGCTTGTCTTGGATAGAGACGCAGTTGAGAGCATGGAATTCATGGAATTGGATTCCCCTGATTTGGTGAGAAAACTGCTTCCCAGTAACCCAAGTGTGGGGTTTTTAAGTGGTGAGATTGGTAGAAATTCTAGTAAAAGAATAGTTTCTCCTACTAATATGGTTACTTCAAATCCAATTTTCGGGGGAGAGGAGTCGAGTTCGAGGCTTTCAAGTTCTTTCATGGAGTCAAACAGTCAAGATTCCTCAATAATTGATTTGAAACTGGGGAGATTGGCTGATTGTATAGATGCCAAGAATAACAGATGCTCAAAAGAGGGATCAGTTTTATCTTCACTAGCTTCATCCATGCCGGCAAAGAGAGCCCGCACCACGAGTGTGTGTTCTCAAACTCCTCTCTGCCAAGTTCATGGTTGTAACATGGATCTTAGCTCCTCGAAGGACTACCATAAGAGGCATAAAGTTTGCGATGTTCATTCAAAGACTCCCAAAGTTATTGTTAATGGCATTGAGCAGAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGGAGTTGCCGTAAACGGCTTGCAGGTCACAATGAGCGTAGGAGGAAGCCTCAATTGGATACTCACTCTGGTAAACCACAGAAACTGCTTCAGTCATATCCAGGCACCAGGATTCTGGGGACTTCCTTAGCAAAGAGACCACCCTTTGTTTTCCAGGACATACTTCCTGGCAGTGTTTATTGTCCAGATGGATATGGACAAGCTAATCCATCCAGGAGCATCAAATTAGAAAAGGAGCCAATTTACAGCTCTCAATTAGTGATACCTATAAGTGGGCAGTTGCCTCCAAAATCCTTTCTCCATCTTTATGGCACCGAGAGACAATGTCCTCCTGGGTTTCTATCATCTGGAACTGAGGACTGCACTGGCTTTTACCCAGCATCAACAGTTCAAGAATTACCTGGAGTCTCAAAATCCAATTGTGCTCTCTCTCTTCTGTCAGCTCAATCGCAGGACTTGTCAAACCATTTGATGGGAATTCCAATGGCTAACCCCCCCACAGTCCAAGGCTGTCATGCTCATTACAGTGCAGTTCACAATTCTGACAAGCCAATTGGGATGAGTTCTTTGGAAAAATTTGCATCAAATGGTTCCTATTCATCTAGGATGAACTCAGTGGAAGTTGCCCAGATGGGGCCTGTAATGCTCCCTGATGGTGGTAATGCTGTTAGCTTTGAAGTCCGCACAAACAGGAATTTTCAGGGATCTGATTTTCTGAATGCTAAGTATTCTCACTCTTCTGAACGTGAACCTACAGTTGATTTACTCCAATTGTCATCACATCTTAAAAGAGTAGAGTGGCAGAGGAATTATATGCATGTGAAGCAAGAAAATGATGATTTTCACTGTTTTCCTACTACTTAA 1692 0.4161 MKEIISFSFFLFFLFSFFESFRHLSGNIFSANLDAVLLMESWSHALEKKMFLYSEEMDLTTDAVGRSRKLLTGWDMRTPFNFENDGLVLDRDAVESMEFMELDSPDLVRKLLPSNPSVGFLSGEIGRNSSKRIVSPTNMVTSNPIFGGEESSSRLSSSFMESNSQDSSIIDLKLGRLADCIDAKNNRCSKEGSVLSSLASSMPAKRARTTSVCSQTPLCQVHGCNMDLSSSKDYHKRHKVCDVHSKTPKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQLDTHSGKPQKLLQSYPGTRILGTSLAKRPPFVFQDILPGSVYCPDGYGQANPSRSIKLEKEPIYSSQLVIPISGQLPPKSFLHLYGTERQCPPGFLSSGTEDCTGFYPASTVQELPGVSKSNCALSLLSAQSQDLSNHLMGIPMANPPTVQGCHAHYSAVHNSDKPIGMSSLEKFASNGSYSSRMNSVEVAQMGPVMLPDGGNAVSFEVRTNRNFQGSDFLNAKYSHSSEREPTVDLLQLSSHLKRVEWQRNYMHVKQENDDFHCFPTT* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0012 563 Gene3D - 210 280 IPR036893 GO:0003677|GO:0005634
Vvi1g0012 563 MobiDBLite consensus disorder prediction 283 306 - -
Vvi1g0012 563 ProSiteProfiles Zinc finger SBP-type profile. 216 293 IPR004333 GO:0003677
Vvi1g0012 563 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 164 546 IPR044817 GO:0003677
Vvi1g0012 563 FunFam Squamosa promoter-binding-like protein 14 210 280 - -
Vvi1g0012 563 Pfam SBP domain 219 292 IPR004333 GO:0003677
Vvi1g0012 563 SUPERFAMILY SBT domain 217 298 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0012 Vvi-Chr1 231448 235218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0012 165 561 SBP-box Gene Family AT1G69170 37.905 4.87e-62 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi1g0012 SBP 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0012 - - vri:117919650 1076.62