Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0008 ATGGGTTGTGTTTCTTCCTGTTTCGGCCCGAGGGATTGGGAAGATAACCAAGACAGGTCCATCCACACAAACCGCACCTGTCCCGGTGCCTTCATTCCCAACTTTCTCAACAAGATTCTGAACCACACGGGAGAAGCAATATTCAGGCGGGCCTGGAACTTGTTAGCGGGGGAGGCACACTCAGTAGGTCTTACTGTGAAGGGGGATCAAGAAAATGCTATTCTGAGTCCACTAGTGGAGCCATCAACAGCAGAAGTGGCCGGTAGAATTGAGTGTATCTCTACATCATCAGAAGATGAGGATGTCTGTCCCACATGCCTTGAAGATTACACTCCTGAAAATCCTAAGATAGTTACACAATGTTCTCATCATTTCCACCTTGGTTGTATATATGAGTGGTTGGAGAGAAGCCAAACCTGTCCAGTTTGTAGTAAGGTAACTAGTTTCTATTATACATCTTCTGATTTCATTCTAAATATTATACTTTTTCAGTTGGTATCTTAG 504 0.4405 MGCVSSCFGPRDWEDNQDRSIHTNRTCPGAFIPNFLNKILNHTGEAIFRRAWNLLAGEAHSVGLTVKGDQENAILSPLVEPSTAEVAGRIECISTSSEDEDVCPTCLEDYTPENPKIVTQCSHHFHLGCIYEWLERSQTCPVCSKVTSFYYTSSDFILNIILFQLVS* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0008 167 CDD RING-H2_AIRP1-like 99 146 - -
Vvi1g0008 167 SMART ring_2 103 143 IPR001841 -
Vvi1g0008 167 Pfam Ring finger domain 102 143 IPR001841 -
Vvi1g0008 167 ProSiteProfiles Zinc finger RING-type profile. 103 144 IPR001841 -
Vvi1g0008 167 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 73 149 - -
Vvi1g0008 167 SUPERFAMILY RING/U-box 97 150 - -
Vvi1g0008 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 156 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0008 Vvi-Chr1 116646 118695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0008 90 149 C3H Transcription Factor Family AT5G38895 71.667 1.04e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0008 - - sspl:121809328 121.709