Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1441 ATGATGCCAGCAAGTGGACAGCTCTCAGTTCCTCCAGGCTTTCGATTCCACCCTACTGACGAAGAGCTTCTCCATTATTATTTAAGGAAGAAAGTCTCTTATGAAGCCATCGACCTTGATGTTATCAGGGAAGTGGATCTCAACAAGCTGGAGCCCTGGGACCTAAAAGATAAATGCCGAATTGGATCAGGCTCTCAGAACGAGTGGTATTTCTTCAGCCACAAGGATAAGAAATACCCAACTGGAACTCGAACAAACCGAGCAACCATGGCTGGTTTTTGGAAGGCAACAGGGAGGGACAAGGCCATCCACCTTAGCAACTCCAAGAGGATTGGCCTGAGAAAAACCCTAGTCTTCTACACTGGGCGTGCTCCTCACGGCCAAAAGACTGACTGGATTATGCATGAGTATCGCCTGGATGATGACAATGCCGATGTTCAGGAAGATGGCTGGGTGGTCTGCAGGGTATTTAAGAAGAAAAATCATAATAGAGGGTTTCAATCAGAAGCTGCTCAAGAAGAATACTTGACTCATATGAGAGCAAGTGGGTCTGCTCTGTTGGAGCCAAAACAAAATGTGCAAGCACTCTACGATTTTAACTTTGATGGCTCCATGCATCTCCCGCAGTTGTTGAGTCCAGAATCAGCAGTGCCTCCATCCTTCATATCACCGCTCTCCTTGAACACTATGGACATCGAGTGTTCCCAGAACTTGTTGAGGTTAACATCAACTGGTTGTGGACTCATTCAACAGGAGAGGATGAATGGTGACTGGTCATTCTTGGACAAGTTGCTGGCATCCCATCAGAGCTTGGATCAGCACTCTCAAACCAAATGCCATCCTTCCTCGCAAGTCGTTGATCATGTGGGCACTTCAGCTCAGAAATTTCCATTCCAATATCTTGGTTGTGAAACCGACATTTTGAAATTTTCCAAGTAG 939 0.4622 MMPASGQLSVPPGFRFHPTDEELLHYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGSQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAIHLSNSKRIGLRKTLVFYTGRAPHGQKTDWIMHEYRLDDDNADVQEDGWVVCRVFKKKNHNRGFQSEAAQEEYLTHMRASGSALLEPKQNVQALYDFNFDGSMHLPQLLSPESAVPPSFISPLSLNTMDIECSQNLLRLTSTGCGLIQQERMNGDWSFLDKLLASHQSLDQHSQTKCHPSSQVVDHVGTSAQKFPFQYLGCETDILKFSK* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1441 312 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Vvi19g1441 312 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 254 - -
Vvi19g1441 312 FunFam NAC domain-containing protein 19 163 - -
Vvi19g1441 312 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Vvi19g1441 312 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
Vvi19g1441 312 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1441 Vvi-Chr19 23954168 23955930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1441 2 312 NAC Transcription Factor Family AT1G79580 56.452 1.38e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi19g1441 NAM 5.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1441 - - vvi:100255276 651.358