Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1438 ATGGCGAATCAACTCTACGGCTACAACCCTAGCTACGGAGCTGCAGCATCCAATCTCTCCTCCGTATATCCTTCTCGATCTGTCACAGATCCGTTTCTGTCCGATTCTTCCCTTCTTTCCTCTTCCAGATATCTCTCCTCCGATCATCTCTCTTCCGATCCCTCTTACTATTCCGTTACCGAGCGTCATTCTTCCATGTTCGACGGCCTCCGCTTCTCTGCTTCCGATATCGGTGGCGCCGGTGCTTTCTCTTCAAGAATTCCTGGCGGAATTGGTGCCTCTGTGTCGACGCACGGTGTTGATGTTGGTGCTTCTGTCGACCCCCTCGTTGCTGGCCTCAAGCGGTCTTCTGAAGCGCTCTACCATCCATCTGTTCTGGGTGCCCATAACACGATTGGGCAAAGTGAAGCTTGGTTTTCTACCAATTCTCTAGCCAAGCGCCCCAGATTCGAGAGTGCCAGCAATTTACCTATTTATCCACAAAGGCCAGGAGAAAAGGATTGTGCACACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAATTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAATTGTTGCTGCAAATGAATTCCTTCCCCAGAGGCCGGGAGAGCCAGATTGTCCATACTTTATGAAGACACAAAAATGCAAGTTCGGTCATAAGTGCAAGTTTAACCATCCAAAAGATCAAATAATTTCTTTGGGTGCTCCAGAAAATACTGATGTTTTTGTTTTACCTGAGAGGCCCTCTGAGCTCCCATGTGCGTTCTATGTGAAGACTGGGAAATGTAAATTTGGTGCCACCTGCAAGTTTCATCACCCAAAAGATATACAAATAGCATCAACTGGAAAAAATAATGCTGATGGTGAACAGGCTGAAACAGGAGCCAAGGGTGCTGGAACAACTGGGGATGTGAAGCTACCTGTTTCAGTCACTCCAGCGCTAGTACATAACTCCAAAGGACTCCCTATGAGACTGGGTGAAGTTGACTGTCCGTTCTACCTGAAAACTGGCAGTTGCAAATATGGTGCCACTTGCCGCTACAATCATCCAGACAGGAATGCAATCAATCCACCAGCTGCTGCAATAGGCCATGCTATTGTAGCCTCTCCTGCAGCTAATCTGAATGTTGGAGTGGTTAATCCAGTCACATCTATTCTTCATCCTATTGACCCCAGGCTTTCGCAAACGATGGGGGTGGGCCCCACTATTTACCCTCAAAGACCTGGACAGATGGAATGTGATTTTTATATGAAAACTGGAGAATGTAAGTTTGGGGAAAGATGCAAATTTCATCACCCTATTGATCGATCTGCACCAACAGCTACAAAGTTACAACAAAATATTAGGCTCACTCTTGCAGGTTTTCCTAGGAGAGAGGGTACAATTATCTGCCCTTTCTACTTGAAGACTGGCACCTGCAAGTATGGGGTAACATGCAAATTTGATCACCCACCCCCTGGAGAGGTCATGGCCATGGCAACATCACAGGGAGCATCCACATCTGCTGGAGAGGAAGCAAATGGGGACGAAAAAGAGGATGAAACTGCTAAAGAAGAAGAACAGTGA 1608 0.4683 MANQLYGYNPSYGAAASNLSSVYPSRSVTDPFLSDSSLLSSSRYLSSDHLSSDPSYYSVTERHSSMFDGLRFSASDIGGAGAFSSRIPGGIGASVSTHGVDVGASVDPLVAGLKRSSEALYHPSVLGAHNTIGQSEAWFSTNSLAKRPRFESASNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPIVAANEFLPQRPGEPDCPYFMKTQKCKFGHKCKFNHPKDQIISLGAPENTDVFVLPERPSELPCAFYVKTGKCKFGATCKFHHPKDIQIASTGKNNADGEQAETGAKGAGTTGDVKLPVSVTPALVHNSKGLPMRLGEVDCPFYLKTGSCKYGATCRYNHPDRNAINPPAAAIGHAIVASPAANLNVGVVNPVTSILHPIDPRLSQTMGVGPTIYPQRPGQMECDFYMKTGECKFGERCKFHHPIDRSAPTATKLQQNIRLTLAGFPRREGTIICPFYLKTGTCKYGVTCKFDHPPPGEVMAMATSQGASTSAGEEANGDEKEDETAKEEEQ* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1438 535 FunFam zinc finger CCCH domain-containing protein 37 419 513 - -
Vvi19g1438 535 MobiDBLite consensus disorder prediction 504 535 - -
Vvi19g1438 535 ProSiteProfiles Zinc finger C3H1-type profile. 338 366 IPR000571 GO:0046872
Vvi19g1438 535 ProSiteProfiles Zinc finger C3H1-type profile. 162 190 IPR000571 GO:0046872
Vvi19g1438 535 SMART c3hfinal6 214 241 IPR000571 GO:0046872
Vvi19g1438 535 SMART c3hfinal6 261 288 IPR000571 GO:0046872
Vvi19g1438 535 SMART c3hfinal6 162 189 IPR000571 GO:0046872
Vvi19g1438 535 SMART c3hfinal6 472 499 IPR000571 GO:0046872
Vvi19g1438 535 SMART c3hfinal6 338 365 IPR000571 GO:0046872
Vvi19g1438 535 SMART c3hfinal6 421 448 IPR000571 GO:0046872
Vvi19g1438 535 SUPERFAMILY CCCH zinc finger 163 189 IPR036855 GO:0046872
Vvi19g1438 535 PANTHER PROTEIN PHOSPHATASE RELATED 323 372 - -
Vvi19g1438 535 SUPERFAMILY CCCH zinc finger 474 499 IPR036855 GO:0046872
Vvi19g1438 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 216 241 IPR000571 GO:0046872
Vvi19g1438 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 266 288 IPR000571 GO:0046872
Vvi19g1438 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 341 364 IPR000571 GO:0046872
Vvi19g1438 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 426 447 IPR000571 GO:0046872
Vvi19g1438 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 474 499 IPR000571 GO:0046872
Vvi19g1438 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 164 188 IPR000571 GO:0046872
Vvi19g1438 535 ProSiteProfiles Zinc finger C3H1-type profile. 261 289 IPR000571 GO:0046872
Vvi19g1438 535 Gene3D - 420 515 - -
Vvi19g1438 535 Gene3D - 161 247 - -
Vvi19g1438 535 ProSiteProfiles Zinc finger C3H1-type profile. 472 500 IPR000571 GO:0046872
Vvi19g1438 535 FunFam Zinc finger CCCH domain-containing protein 37 323 371 - -
Vvi19g1438 535 SUPERFAMILY CCCH zinc finger 422 450 IPR036855 GO:0046872
Vvi19g1438 535 SUPERFAMILY CCCH zinc finger 341 365 IPR036855 GO:0046872
Vvi19g1438 535 MobiDBLite consensus disorder prediction 521 535 - -
Vvi19g1438 535 FunFam Zinc finger CCCH domain-containing protein 37 118 199 - -
Vvi19g1438 535 SUPERFAMILY CCCH zinc finger 219 243 IPR036855 GO:0046872
Vvi19g1438 535 ProSiteProfiles Zinc finger C3H1-type profile. 421 449 IPR000571 GO:0046872
Vvi19g1438 535 Gene3D - 248 299 - -
Vvi19g1438 535 Gene3D - 324 371 - -
Vvi19g1438 535 SUPERFAMILY CCCH zinc finger 264 288 IPR036855 GO:0046872
Vvi19g1438 535 ProSiteProfiles Zinc finger C3H1-type profile. 214 242 IPR000571 GO:0046872
Vvi19g1438 535 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1438 Vvi-Chr19 23853638 23873669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1438 336 514 C2H2 Transcription Factor Family AT3G02830 34.444 7.80e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi19g1438 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1438 - - vvi:100260359 1059.28