Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1435 ATGGCTTTGGAGAAGATCAAGGTGGACAACCCCATCGTTGAGATGGATGGTGATGAAATGACTCGGGTTTTCTGGAAATCAATCAAGGATAAGCTTATTCTCCCCTTTCTAGAGTTGGATATCAAATACTTTGATCTTGGCCTACCCAACCGTGAGGCCACTCGTGATCAAGTTACGGTTGATAGTGCTCATGCCACTCTTAAGTATAATGTGGCGATTAAGTGTGCAACTATAACTCCAGATGAAGCCCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAAGAGTCCAAATGGGACTATTAGGAACATTTTAAATGGTACTGTTTTCAGAGAACCAATTATCTGCAAGAATGTTCCTCGCCTCATCCCAGGTTGGTCCAAGCCAATATGCATTGGAAGGCATGCTTATGGGGATCAATATCGAGCAACTGATGCCGTTATTGAAGGATCCGGAAAACTGAAAATGGTGTTTGTGCCTGATGGACCAAATGAGATAAAAGAATTGGAGGTTTACCAATTTACTGGTGCTGGAGGAGTTGCTTTGTCAATGTATAATACTGATGAGTCCATCCGCGCTTTTGCTGAGGCTTCAATGAACATGGCTTACCAGAAAAGGTGGCCACTTTATCTTTCAACAAAAAATACCATTCTTAAGAAATATGATGGCAGATTTAAAGACATATTCCAAGAGGTTTATGAAGCTCAATGGAAATCCAAGTTTGAAGCTGTGGGGATATGGTATGAGCATCGTCTCATTGATGATATGGTTGCTTATGCCCTTAAAAGTGATGGCGGCTATGTATGGGCCTGCAAAAATTATGATGGAGATGTCCAGAGTGATTTCCTAGCCCAAGGATTTGGATCTCTTGGGTTGATGACTTCAGTACTGGTGTGCCCAGATGGAAAGACTATTGAAGCTGAAGCAGCACATGGCACAGTTACCCGCCATTACAGGGTTCATCAGAAAGGAGGTGAAACCAGCACAAACAGCATAGCCTCTATCTTTGCCTGGTCAAGGGGTCTTGCACACAGGGCAAAGTTGGATGGGAATGCTAGGCTATTGGATTTTACTGAGAAACTGGAAGCAGCCTGTATTGCAACTGTAGAATCAGGGAAGATGACTAAGGATCTTGCACTTCTTATTCACGGGCCTAAGGTTACTAGGGCTCAGTATCTGAACACTGAAGAGTTCATAGAAGCTGTGGCTGAGGAACTGAGAGCAAGGCTGCCTAAAAGATCGAAGTTTTGA 1251 0.4333 MALEKIKVDNPIVEMDGDEMTRVFWKSIKDKLILPFLELDIKYFDLGLPNREATRDQVTVDSAHATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWSKPICIGRHAYGDQYRATDAVIEGSGKLKMVFVPDGPNEIKELEVYQFTGAGGVALSMYNTDESIRAFAEASMNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSKFEAVGIWYEHRLIDDMVAYALKSDGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACIATVESGKMTKDLALLIHGPKVTRAQYLNTEEFIEAVAEELRARLPKRSKF* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1435 416 NCBIfam isocitrate dehydrogenase (NADP(+)) 5 410 IPR004790 GO:0004450|GO:0006102
Vvi19g1435 416 Pfam Isocitrate/isopropylmalate dehydrogenase 7 402 IPR024084 -
Vvi19g1435 416 FunFam Isocitrate dehydrogenase [NADP] 3 413 - -
Vvi19g1435 416 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 3 410 - -
Vvi19g1435 416 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 273 292 IPR019818 GO:0000287|GO:0016616|GO:0051287
Vvi19g1435 416 SMART Iso_dh_2 11 402 IPR024084 -
Vvi19g1435 416 Gene3D Isopropylmalate Dehydrogenase 3 414 - -
Vvi19g1435 416 PIRSF IDH_NADP 1 413 IPR004790 GO:0004450|GO:0006102
Vvi19g1435 416 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 4 414 IPR004790 GO:0004450|GO:0006102
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1435 Vvi-Chr19 23832572 23836006 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1435 K00031 - vvi:100243260 844.343