Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1434 ATGAGCACTAGCACCCGTAGTGACAGCTTAGAGAGCTCTACCACACCCTTGAGACCCCACACTGGTGGTGATATTCGATGGGATGCTATTAATTTGGCCAATTCTAGAGACTCCCCTCTTGGGCTTAGCCATTTTCGGCTGCTCAAGCGCCTTGGCTATGGTGACATTGGAAGTGTCTATCTTGTTGAACTCAGAGGAACCACTGCCTACTTTGCAATGAAAGTGATGGACAAAGCATCTCTTGCAAGTAGAAACAAGCTACTTCGGGCCCAGACAGAGAAGGAGATTCTTGGACTCCTTGACCACCCATTCTTGCCCACTCTGTATTCCTACTTTGAGACTGATAAATTCTATTGCTTGGTCATGGAGTTCTGCAGTGGAGGTAATCTACATTCTCTGCGGCAGAAACAACCCAACAAGCATTTTTCTGAAGAAGCTGCCCGGTTTTATGCATCAGAGGTATTGCTAGCACTTGAGTATCTGCACATGCTAGGCATCGTGTACAGGGATCTGAAGCCAGAAAATGTGCTAGTAAGAGATGAGGGTCATATCATGCTCTCTGACTTTGACCTCTCACTCCGCTGTTCTGTGAGTCCAACGCTAGTCAAGTCTTCATCCGGGCATTCAGGTAGCACAGTTGGTGGTGGTGGCGGAGGTATCAGCAGCGGAGCAATTCTGGATGATGAATATGCAGTGCAGGGGTGTATCCAGCCTTCTACTTTTCTCCCACGCATTCTACCAACTAAAAAAAACCGAAAATCTAAATCAGATTTTGGCCTCTTCGTTGGAGGGTCCCTTCCAGAACTAATGGCAGAGCCCACAAACGTGAGATCAATGTCATTTGTGGGAACCCATGAATACTTGGCCCCAGAGATCATAAGAGGAGAGGGGCATGGCAGTGCTGTGGACTGGTGGACATTTGGTATATTCTTGTACGAGCTGTTGCATGGAACAACTCCCTTCAAGGGCCAAGGCAATCGTGCCACTCTGTTTAATGTTGTAGGGCAGCCATTAAGATTTCCAGATACTCCAACAGTGAGTTTCATGGCTCGTGATCTTATAAGAGGGCTTTTGGTGAAGGAACCGCAGAAGCGAATTGCATACAAAAGGGGTGCCACAGAAATAAAACAACACCCATTCTTTGAAGGAGTGAACTGGGCCCTAGTGAGGAGCGCCATGCCTCCCCACATACCCGAACCAGTAGACTTTGGGCACTTTGCTAGTAAAGAGTCGGGCCATGCTGAGAAGAAGAATTCAGATACTGGGGGTGATAAACACAAGAATAGTCCGAATGATGCTTCTTATGTTGATTTCGAGTACTTTTAG 1326 0.4721 MSTSTRSDSLESSTTPLRPHTGGDIRWDAINLANSRDSPLGLSHFRLLKRLGYGDIGSVYLVELRGTTAYFAMKVMDKASLASRNKLLRAQTEKEILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKHFSEEAARFYASEVLLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVSPTLVKSSSGHSGSTVGGGGGGISSGAILDDEYAVQGCIQPSTFLPRILPTKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGTTPFKGQGNRATLFNVVGQPLRFPDTPTVSFMARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGVNWALVRSAMPPHIPEPVDFGHFASKESGHAEKKNSDTGGDKHKNSPNDASYVDFEYF* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1434 441 SUPERFAMILY Protein kinase-like (PK-like) 32 403 IPR011009 -
Vvi19g1434 441 MobiDBLite consensus disorder prediction 1 20 - -
Vvi19g1434 441 Pfam Protein kinase domain 275 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1434 441 Pfam Protein kinase domain 46 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1434 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Vvi19g1434 441 CDD STKc_phototropin_like 43 404 - -
Vvi19g1434 441 MobiDBLite consensus disorder prediction 401 436 - -
Vvi19g1434 441 Gene3D Transferase(Phosphotransferase) domain 1 274 399 - -
Vvi19g1434 441 MobiDBLite consensus disorder prediction 406 432 - -
Vvi19g1434 441 FunFam Serine/threonine-protein kinase AGC1-7 274 399 - -
Vvi19g1434 441 MobiDBLite consensus disorder prediction 1 19 - -
Vvi19g1434 441 ProSiteProfiles Protein kinase domain profile. 45 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1434 441 FunFam Serine/threonine-protein kinase AGC1-5 43 128 - -
Vvi19g1434 441 FunFam serine/threonine-protein kinase D6PK-like 129 196 - -
Vvi19g1434 441 Gene3D Phosphorylase Kinase; domain 1 43 128 - -
Vvi19g1434 441 SMART serkin_6 45 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1434 441 PANTHER FLIPPASE KINASE 1-RELATED 9 407 - -
Vvi19g1434 441 Gene3D Transferase(Phosphotransferase) domain 1 129 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1434 Vvi-Chr19 23829724 23831633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1434 12 441 AGC Kinase Gene Family AT1G79250 75.893 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vvi19g1434 Pkinase 4.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1434 - - vvi:100241619 862.062