Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1416 ATGGCTCCCATGAGTCTTCCTCCTGGATTCAGATTCCACCCCACTGATGAGGAGCTTGTTGCTTACTACCTAGATCGAAAAATCAATGGTGGCACCATTGAGCTTGAAATAATCCCAGAGGTTGATCTCTACAAGTGTGAACCCTGGGATTTGCCAGATAAATCATTTTTACCAAGCAAAGATATGGAGTGGTACTTCTACAGTCCCAGGGATCGAAAGTACCCTAATGGGTCGAGAACTAACCGGGCGACCCGAGCTGGGTACTGGAAAGCCACTGGGAAAGACCGGGCAGTGCACTCTCAGAAGCGGCCGGTTGGCATGAAGAAGACTCTGGTATACTATAGAGGTCGAGCTCCCCATGGCCTTAGGACTAACTGGGTGATGCACGAGTACCGCCTCATTGATTCAATGTGTGGGTCCACCTCTTCTCTCAAGGATTCGTATGCATTATGCCGCATTTTCAAGAAGACGATACATGTGAGCAAAAACAAGGAAGAAGAGAATGCAAATGTGGGGAAGGAATCGGCTTGGGGCTTAGAGGAACATTTATCAGTGGATGACACAAGTGGAATTGAAAGTTCCCAGGGAAGAGAAGCTGGAGATGAAAATTTTGAGCAAGATTGCCCCAAATTTCCATCTGACACTTCTTCGTCGGATATCACTCAAGGAACACCCTTTGAAACTGGTGTAACAGATGATTTACAAGCTCAATTTCCCTCAGATGAAGCTAACAGTTCAGCTAATTTGTACTCTCTCAATGTGCAGTACTACTCTTCAGATCTAATTCAGGTACAATCTTCTTCTTGGTACAATGATGAGAAATATTTCCTGAAAGTATGTAGTTAG 846 0.4504 MAPMSLPPGFRFHPTDEELVAYYLDRKINGGTIELEIIPEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVHSQKRPVGMKKTLVYYRGRAPHGLRTNWVMHEYRLIDSMCGSTSSLKDSYALCRIFKKTIHVSKNKEEENANVGKESAWGLEEHLSVDDTSGIESSQGREAGDENFEQDCPKFPSDTSSSDITQGTPFETGVTDDLQAQFPSDEANSSANLYSLNVQYYSSDLIQVQSSSWYNDEKYFLKVCS* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1416 281 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Vvi19g1416 281 MobiDBLite consensus disorder prediction 187 231 - -
Vvi19g1416 281 MobiDBLite consensus disorder prediction 209 231 - -
Vvi19g1416 281 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Vvi19g1416 281 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 222 - -
Vvi19g1416 281 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vvi19g1416 281 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Vvi19g1416 281 FunFam Nac domain-containing protein 86 15 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1416 Vvi-Chr19 23474521 23476323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1416 1 262 NAC Transcription Factor Family AT1G54330 61.069 4.76e-96 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi19g1416 NAM 8.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1416 - - vvi:100243251 550.051