Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1415 ATGGGTCATCGCTGCTGCAGCAAACAGAAAGTTAAAAGAGGGTTGTGGTCTCCTGAAGAAGATGAAAAGCTTATCAGATACATCACTGCCCACGGCCATGGCAGTTGGAGTTCTGTTCCAAAACTTGCAGGCTTGCAGAGATGTGGAAAGAGTTGCAGATTGAGATGGATTAACTACTTGAGACCAGAACTCAAGAGGGGTTCTTTTTCTGCACAAGAAGAACAGAGTATCATTGATGTCCACAGAATTTTAGGCAACAGATGGGCTCAGATAGCTAAGCATCTACCTGGGAGAACAGACAATGAGGTGAAGAATTTCTGGAACTCATGCATTAAGAAGAAGCTGATTTCACAAGGCTTGGATCCAAAGACTCACAATCTGATCTCTTCTCATCAGAGAAACACCTCTAATAAGGTTGTCTGCAGTCTACCCCAACCCCATCAACAACCCTTCCCGGTTTTCACTGTAAACCAACAGATGACAGATGATGCTTCCATGGAGGTGAACCGTCTCCCTCCTTTCGTTACACTACCACCTCTTCCACCTACCCAACCCTCATTGCAGCAAACCATGGCCATACCCAACTCTGAATATCAAAACCCCAATCCCGTTTGGACTGCTAAAGATCAGAGCTCTCAATATACAATCAGTTTCCCCTGTGGATCTTCCATTGGAAGCACACCCATTATTTCTTCATCATCTTCTTCTTCTGTAAACCCATTTGGCTTTGGTTTCTTAGACGAGAATTTGATCTGGAATGCTCATGTTGAACCTCTTGAAGGTCCAAGACTGGAACAAGTGCAAACACATCAATACCAAGATCAACATGACCAACAGAAGAACAAGATTAATATCGGTGAAATGGGAAATGATCATGAACAAAAGTGTGGTCAGGACATTGATGTCTCATTTGACAGCTCAAGTTTTGATCTTGAGTTCGTTGAGTCTACACTTCTGTCTGGCGCAATTTGTCGTGATCTATCCTCTATGGATGATCTTGCATGGAATTTTTGA 1014 0.432 MGHRCCSKQKVKRGLWSPEEDEKLIRYITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPELKRGSFSAQEEQSIIDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPKTHNLISSHQRNTSNKVVCSLPQPHQQPFPVFTVNQQMTDDASMEVNRLPPFVTLPPLPPTQPSLQQTMAIPNSEYQNPNPVWTAKDQSSQYTISFPCGSSIGSTPIISSSSSSSVNPFGFGFLDENLIWNAHVEPLEGPRLEQVQTHQYQDQHDQQKNKINIGEMGNDHEQKCGQDIDVSFDSSSFDLEFVESTLLSGAICRDLSSMDDLAWNF* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1415 337 CDD SANT 68 108 IPR001005 -
Vvi19g1415 337 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vvi19g1415 337 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vvi19g1415 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Vvi19g1415 337 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vvi19g1415 337 SMART sant 65 113 IPR001005 -
Vvi19g1415 337 SMART sant 12 62 IPR001005 -
Vvi19g1415 337 FunFam Transcription factor MYB86 67 141 - -
Vvi19g1415 337 CDD SANT 16 60 IPR001005 -
Vvi19g1415 337 PANTHER MYB DOMAIN PROTEIN 55 1 267 - -
Vvi19g1415 337 FunFam MYB transcription factor 5 65 - -
Vvi19g1415 337 Gene3D - 10 66 - -
Vvi19g1415 337 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vvi19g1415 337 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Vvi19g1415 337 Gene3D - 68 140 - -
Vvi19g1415 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1415 Vvi-Chr19 23462691 23463891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1415 1 133 MYB Transcription Factor Family AT3G12720 87.218 3.84e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi19g1415 Myb_DNA-binding 8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1415 K09422 - vvi:100248382 624.78