Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1411 ATGTTCCATCACAAGAAGCCTTCTACTATGAATTCTCACGATAGACCCATGTGTGTTCAAGGTGACTCTGGCCTTGTCCTCACCACCGACCCAAAGCCCCGCCTCCGGTGGACTGTTGAGCTCCATGAACGCTTTGTTGATGCTGTCACTCAGCTTGGAGGACCTGATAAGGCCACCCCGAAGACCATCATGAGAGTCATGGGTGTAAAAGGTCTCACTCTTTACCATCTCAAGAGCCATCTCCAGAAATTCAGGCTTGGAAAGCAGCCACACAAGGAATTCAATGATCACTCAATTAAGGATGCTTCAGCATTAGAACTTCAAAGAAACATTGCATCTTCATCTGGGGTGATGAGCCGCAATACCAACGATAACACACATATAACTGATGCGATTAGGATGCAAATGGAGGTGCAAAGAAGGCTTCACGAACAACTGGAGGTCCAAAGACACCTCCAGTTGAGAATTGAAGCTCAAGGGAAGTACATGCAGACTATACTGGAGAAAGCTTGCCAGACACTTGCAGGTGAAAACATGGCTTTGGGAAACTACAAGGGTATCGGAAATCAAGGAGTTCCTGACATGGGAGCGATGAAGGATTTCGGTTCTTCCTTGAACTTTCCATCTCTTCAAGACCTAAACATTTATGGAGGTGACCAGCTTGACCTTCAACAAAGCATGGACAGATCACTTGATGGCTTCATACAGAATACTGAGAACATGTGTTTGGGAAAGAAGAGGCCTAGCCCTTATAGTGGTAGTGGCAAGAACCCTCTAATCTGGTCTGATGATCTTCGGATGCAAGAACTGGGAACAGCAGCATCCTGTCTAGGCTCTCAAGATGATCCATTCAAGGGTGATCAAATTCAAATTGCACCACCATCAATGGATAGAGGAGCTGATATGGATTCCATATCCGACATTTATGAAACAAAGCCAATTCTCTCTGGTGATCCTATGGGAGAAAAGAAATTTGATGGGTCGGGGTCGGCAAAGCTTGGAAGGCCATCGCCACGTAGAGCACCACTTCCCACAGATAGGATGAATCCCATGATCAATGCTGGTGCCATGCCACAAGGAAGAAGTTCATACGGGTGA 1098 0.4636 MFHHKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASALELQRNIASSSGVMSRNTNDNTHITDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQTILEKACQTLAGENMALGNYKGIGNQGVPDMGAMKDFGSSLNFPSLQDLNIYGGDQLDLQQSMDRSLDGFIQNTENMCLGKKRPSPYSGSGKNPLIWSDDLRMQELGTAASCLGSQDDPFKGDQIQIAPPSMDRGADMDSISDIYETKPILSGDPMGEKKFDGSGSAKLGRPSPRRAPLPTDRMNPMINAGAMPQGRSSYG* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1411 365 Gene3D - 31 89 - -
Vvi19g1411 365 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 209 IPR044848 GO:0003700
Vvi19g1411 365 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Vvi19g1411 365 Pfam MYB-CC type transfactor, LHEQLE motif 127 173 IPR025756 -
Vvi19g1411 365 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Vvi19g1411 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Vvi19g1411 365 FunFam Myb family transcription factor 31 89 - -
Vvi19g1411 365 MobiDBLite consensus disorder prediction 312 365 - -
Vvi19g1411 365 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1411 Vvi-Chr19 23388302 23390037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1411 1 363 G2-like Transcription Factor Family AT1G79430 58.656 7.67e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi19g1411 Myb_DNA-binding 2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1411 - - vri:117908572 745.347