Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1410 ATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTACTTCGGAGCCAGTGCCTTATTGGAGGAAAATGGACTGAAGCTTATGATGGGAAGACCATACCGGTCCACAACCCTGCTACTGGTGATGTTTTAGTAAATGTTCCATGCATGGGAGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTATATATGGTGATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATGATCACACGGAAGGTTGGTCCTGCCCTTGCTTGTGGCTGCACAGTGGTTATAAAACCTTCTGAACTTACACCATTGACAGCCTTAGCAGCAGCTGAGCTTGCCCTTCAAGCTGGAATACCACCGGGTGCTGTGAATGTGGTCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATGGCTGGTGCAGCTCAGACTGTTAAAAAGGTATCTCTGGAACTTGGTGGTAATGCACCTTGCATAATCTTTGACGATGCAGACCTGGAGGTGGCAGTAAAAGGGGCTCTTGGTACAAAGTTCCGTAACAGTGGACAAACATGTGTTTGTGCAAATAGAATACTTGTGCAGGAAGGTATTTATGAGAAATTTGCAATTGCTTTTTCACAAGCTGTCCAAAGTATGCAAGTTGGTGAAGGTTTTACTGAAGGTGTGGTCCAGGGTCCACTGATTAATGAGGCTGCAGTGCAGAAGGTTGAATCATTTGTTAAAGATGCTGTCTCAAAGGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCTATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCACTGAAGCCCTTGAATATGGACTGGTTGGTGTCAATGAAGGATTGGTTTCAACAGAGGTGGCTCCATTTGGAGGAGTCAAGGAGTCTGGTCTTGGTAGGGAAGGTTCCAAATATGGGATGGATGAATTTCTGGAAATGAAATATGTGTGCTTCGGAAATATAAGCAGTAACTGA 1482 0.4494 MDTQNLVARLNSSGLLRSQCLIGGKWTEAYDGKTIPVHNPATGDVLVNVPCMGGQETNDAISVAYEAFLSWSKLTAAERSKRLRKWYDLLIANKEELGQIITLEQGKPLKEAIGEVNYGAAFIEFSAEEAKRIYGDIIPSPLADRRLLVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELALQAGIPPGAVNVVFGNAPEIGDALLASRQVRKITFTGSTAVGKKLMAGAAQTVKKVSLELGGNAPCIIFDDADLEVAVKGALGTKFRNSGQTCVCANRILVQEGIYEKFAIAFSQAVQSMQVGEGFTEGVVQGPLINEAAVQKVESFVKDAVSKGAKVLLGGKRHSLGMTFYEPTVIGDIKNDMLIARNEVFGPVAPLLRFKTEEEAIRIANDTNAGLAAYVFTENVQRMWRVTEALEYGLVGVNEGLVSTEVAPFGGVKESGLGREGSKYGMDEFLEMKYVCFGNISSN* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1410 493 FunFam Succinate-semialdehyde dehydrogenase I 32 275 - -
Vvi19g1410 493 Pfam Aldehyde dehydrogenase family 26 485 IPR015590 GO:0016491
Vvi19g1410 493 CDD ALDH_F5_SSADH_GabD 37 487 - -
Vvi19g1410 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 32 479 IPR016162 GO:0016491
Vvi19g1410 493 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 289 300 IPR016160 GO:0016491
Vvi19g1410 493 FunFam Succinate-semialdehyde dehydrogenase I 265 454 - -
Vvi19g1410 493 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 12 489 - -
Vvi19g1410 493 SUPERFAMILY ALDH-like 15 489 IPR016161 GO:0016491
Vvi19g1410 493 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 261 268 IPR029510 GO:0016491
Vvi19g1410 493 NCBIfam succinate-semialdehyde dehydrogenase 37 483 IPR010102 GO:0009013|GO:0009450
Vvi19g1410 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 265 454 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1410 Vvi-Chr19 23355570 23383396 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1410 1 493 Aldehyde Dehydrogenase Gene Family AT1G79440 78.905 0.0 797
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1410 K17761 - vvi:100262240 953.355