Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1386 ATGCACAAATTGGGTAGAGGTCACCGGGACAAAGTCCAGCAATTCATGGCAATAACTGGGGCAAGTGAAAAAGTTGCTCTTCATGCTTTGAAGGCCAGTGATTGGCATCTTGAAGGAGCATTTGATGTATTTTACAGTCAGCCCCAGATTAAAGCATTTACTGATTCTAGACATTTGGAGGAGCTTTACAGTAGATATAAAGATCCATATGTTGATATGATAATGGCTGATGGCATCTCCGTCCTTTGCAATGACCTTCAGGTGGATCCTCAAGATATTGTTATGTTAGTTGTCTCATGGCACATGAAGGCTGCCACAATGTGCGAATTTTCAAAACAGGAGTTCATTAGTGGATTGCAAGCATTGGGGATAGATTCACTGGAGAAATTTCGTGAGAGGATACAATTCATGCGTACTGAGCTGAAAGATGAACAAAAGTTCCGTGAGATATACAACTTTGCTTTTGGCTGGGCTAAAGAAAAGGGTCAGAAATCTTTGGCATTGGATACTGCAATTGGTATGTGGCAGTTACTATTTGCTGAAAAGCAATGGGCGTTGGTTGATCACTGGTGCCAGTTCCTACAGGCTCGACATAATAAAGCAATCTCTAGGGACACCTGGTCTCAATTATTGGAGTTTGCAAAGACTGTGGATCCTTCACTGTCTAATTATGATGCTGAAGGAGCTTGGCCGTATCTCATTGATGAGTTTGTGGAGTACTTGAATGAGAACAACATCATCCAAAAGGGCCAGCCGATTGACTGGAGCCTAAAACGGTGA 780 0.4244 MHKLGRGHRDKVQQFMAITGASEKVALHALKASDWHLEGAFDVFYSQPQIKAFTDSRHLEELYSRYKDPYVDMIMADGISVLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFISGLQALGIDSLEKFRERIQFMRTELKDEQKFREIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWALVDHWCQFLQARHNKAISRDTWSQLLEFAKTVDPSLSNYDAEGAWPYLIDEFVEYLNENNIIQKGQPIDWSLKR* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1386 259 Gene3D Cullin, PONY binding domain 143 251 IPR042460 -
Vvi19g1386 259 Gene3D - 6 47 - -
Vvi19g1386 259 Pfam UBA-like domain 9 47 - -
Vvi19g1386 259 CDD UBA_DCNL 8 48 - -
Vvi19g1386 259 FunFam Defective in cullin neddylation protein 143 248 - -
Vvi19g1386 259 FunFam Defective in cullin neddylation protein 53 142 - -
Vvi19g1386 259 Pfam Cullin binding 130 240 IPR005176 -
Vvi19g1386 259 SUPERFAMILY UBA-like 7 46 IPR009060 GO:0005515
Vvi19g1386 259 ProSiteProfiles DCUN1 domain profile. 54 242 IPR005176 -
Vvi19g1386 259 PANTHER RP42 RELATED 22 245 IPR014764 -
Vvi19g1386 259 FunFam Defective in cullin neddylation protein 6 47 - -
Vvi19g1386 259 Gene3D - 53 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1386 Vvi-Chr19 23045501 23055102 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1386 K17822 - vvi:100245090 534.643