Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1378 ATGGCAGCCATGAATGCTTGGCTCTCCTTCCCCTCCAATACTGAGAGTTTCAACCATGAACTCGCCATTCGGAGGTTTTGCCCGGCTCGAATCGAGCAAGAACAAGGAGGAGGAGAGTGGGAAGATGGTATGAATGAGATTGATCAGCCTTGGTCTCCTTACAATGCTGTCAGCCCCCCTTGCTTGGCTGCCTCTGAGGAAGATGAATTCGTCGATAGCTTCATTAATATGGATGGCTACAACGACTACGGCAATGATGATAACAAGGCCCTCGAAAGCCAACAAGGGTTTGATCATAATTTTCAAGGGGATGAAGCCATTGAAATGTTTGAGATGGTGGATGAGGGCTATGAAGATGCAGGGATGGTGGTTGAGGGGGAGGATCTTGGAGGTGGCACAGACCTGATGCCAAGCATGGAAGAGGTGAGCCATGGGGTGGACCAAGGGCTCCAGCTGGTGCACTCATTGCTGGCATGTGCTGAGGCGGTAGGCTGCCGGGACACCCAGCTTGCAGACTCCATGCTCAGCCGGATATGGAGGTCTGCTAATTGTTATGGTGATTCCTTGCAGAGAGTCTCCTACTGCTTCGCCATGGGGCTGAAGTCCCGGCTTTTGCATCTCCGGAATGTGAATGCAAATGGGACATTCGCCAATGGCAGAATGGCAGTGTCCTCCATCAACAAAGAGGAGAAAATGGAAGCCTTTCAACTCCTTCACCAGACCACTCCCTACATTGCTTTCGGTTTCATGGCTGCGAATGAAGCTATACTTAAAACTGGAAAAGGGAATGACTCACTTCATATCATTGATCTGGGAATGGAGCATTGCCTTCAATGGCCTTCCCTGATAAGGACTCTAGCTCAAGAACCAGAAGGGCCCCCAAAGCTCCGAATCACCGGACTGGTTAAAGATGGTGACAGCCTCTCAGGGCTCAAAGCCAGCTTGAAAGAACTGGCAGAGTATGCCGCCACAATGGGGGTTCCCTTGCAGCTTAACACGGTATCAGATCCTGCAACCCCGGCCTTTCTAACAAAAGAAAGCCTTGATGTAAGGGAAGGAGAGGTTTTATTTGTGAACAGCATAATGCACCTTCACAAGTATGTGAAAGAGAGCAGAGGCTCCCTCAAGGCGGTCCTCCAAGCGATAAAGAAGCTCGGGCCGACACTGGTGACGGTGGTGGAGCAGGACGCCAACCACAACGGGCCCTTCTTCCTGGGGAGATTCCTGGAGTCATTACACTACTATTCAGCCATATTCGACTCCCTGGAGGCCAGTCTTCCAAGGAGCAGCCCACAGAGGATGAAGATAGAGAGGGGTCACTTTGGGGAGGAGATAAGAAACATAGTTGCATTTGAGGGATCAGAGAGGATTGAGAGGCATGAGAGGGCAGACCAGTGGAGAAGGCAACTGGGGCGAGCTGGGTTTCAAGTGGTGGGGATGAAGTCGATGAGTCAGGCCCGGATGATGCTGTCTGTTTATGGGTGTGATGGCTACAGTCTGGCTTGTGAGAAGGGATGCCTCCTTCTTGGGTGGAAAGGGAAGCCGATCATGCTCGCTTCTGCATGGCAAGTAGCTAAAGCTTCATCGTCATAA 1593 0.5135 MAAMNAWLSFPSNTESFNHELAIRRFCPARIEQEQGGGEWEDGMNEIDQPWSPYNAVSPPCLAASEEDEFVDSFINMDGYNDYGNDDNKALESQQGFDHNFQGDEAIEMFEMVDEGYEDAGMVVEGEDLGGGTDLMPSMEEVSHGVDQGLQLVHSLLACAEAVGCRDTQLADSMLSRIWRSANCYGDSLQRVSYCFAMGLKSRLLHLRNVNANGTFANGRMAVSSINKEEKMEAFQLLHQTTPYIAFGFMAANEAILKTGKGNDSLHIIDLGMEHCLQWPSLIRTLAQEPEGPPKLRITGLVKDGDSLSGLKASLKELAEYAATMGVPLQLNTVSDPATPAFLTKESLDVREGEVLFVNSIMHLHKYVKESRGSLKAVLQAIKKLGPTLVTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRSSPQRMKIERGHFGEEIRNIVAFEGSERIERHERADQWRRQLGRAGFQVVGMKSMSQARMMLSVYGCDGYSLACEKGCLLLGWKGKPIMLASAWQVAKASSS* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1378 530 ProSiteProfiles GRAS family profile. 143 523 IPR005202 -
Vvi19g1378 530 Pfam GRAS domain family 152 523 IPR005202 -
Vvi19g1378 530 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 116 522 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1378 Vvi-Chr19 22922082 22923674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1378 147 527 GRAS Transcription Factor Family AT1G66350 39.231 1.99e-84 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi19g1378 GRAS 9.9e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1378 - - vvi:100262121 1051.58