Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1376 ATGGATCAGCCAGAACAGACACAGCCGCAGCAGCAGCAGCAGCATCAAGTAGTGGGGGTTGTAGCTGGTGCTGGTCAAATGGCCTATGGTACTTCTCCCTACCAAACTGCTCCAATGGTGGCTTCTGGTAGTCCTGCAGTGGCTGTTCCTTCTCCAACTCAGCCTCCCGGTACTTTCCCTGCTCCTCCACATCAGCTTGCCTTTCAACAAGCCCAGCAGTTCCACCACCAACAGCAGCATCAACAGCAGCAGCAGCTTCAAATGTTCTGGTCGAATCAAATGCAGGAAATTGAGCAAACAACTGATTTCAAGAACCACAGCCTCCCTCTTGCTCGGATCAAGAAAATAATGAAAGCTGATGAAGATGTGAGGATGATTTCAGCTGAGGCTCCAGTAGTATTTGCAAAGGCTTGTGAGATGTTTATCCTGGAGCTGACTTTGCGCTCTTGGATCCATACAGAAGAGAACAAAAGAAGAACACTTCAGAAGAACGATATTGCTGCTGCCATTTCAAGGACTGATGTTTTTGACTTCTTGGTTGATATTATTCCAAGAGATGAGCTGAAAGAGGAGGGTCTTGGGGTCACTAAGGCTAGTATTCCAGTGGTGGGTTCCCCAGCTGATGCTATTCCATATTACTACGTTCCTCCCCCACCAGTAGGACCTACAGGCATGATCATGGGGAAGGCAGTTGTTGATCAATCATCGATATATGCTGCCCAACAGCCTCGACCTCCTGTGCCTTTCATGCCATGGCCACAGGCGCAGTCTCAGCCCCAGCAACCCCAACAGCAGCAAACAGATACTTGA 810 0.4914 MDQPEQTQPQQQQQHQVVGVVAGAGQMAYGTSPYQTAPMVASGSPAVAVPSPTQPPGTFPAPPHQLAFQQAQQFHHQQQHQQQQQLQMFWSNQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKASIPVVGSPADAIPYYYVPPPPVGPTGMIMGKAVVDQSSIYAAQQPRPPVPFMPWPQAQSQPQQPQQQQTDT* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1376 269 FunFam Nuclear transcription factor Y subunit gamma 72 185 - -
Vvi19g1376 269 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 65 261 - -
Vvi19g1376 269 SUPERFAMILY Histone-fold 67 179 IPR009072 GO:0046982
Vvi19g1376 269 Gene3D Histone, subunit A 68 185 IPR009072 GO:0046982
Vvi19g1376 269 MobiDBLite consensus disorder prediction 242 269 - -
Vvi19g1376 269 Pfam Core histone H2A/H2B/H3/H4 68 170 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1376 Vvi-Chr19 22905776 22906585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1376 86 215 CCAAT-HAP5 Transcription Factor Family AT1G56170 90.076 1.46e-83 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vvi19g1376 Histone 5.9e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1376 K08066 - vvi:100243367 374.4