Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1360 ATGGGGACAAATGAGGTTGCAATTATTGAAGATCATGGAACAATTAATACTAATACAAACAGTATTAGGAGGAAGACTCCCCTCCAGCTTAAAACTCTCGAGAGCTTGTATTCGGAGGATAACTATCCCACACAAAGGGTTATGAAAGATTATGCTGCGGCTTTAGGATTGACATACAAGCAGGTCAGGGGATGGTTTTTTGAGAGGAGAAGAAAAGAGAAAAATGAAAATGGTATGGGAGTATCATCAAGTAAGAAACTTGTTAGGGCCAAAAATGGGATTGGAGTCGTAGCTGCAAAAAAGATAATTAGGCGAGTTGGCTTGGCAGCTCATTGTAGAGGAAACATGTCTTCATCTTCAACATACAACAGGGCATGCCTTGGGGCTCACCATTGGCATTGTTTTCGCAATCATGACTCTAGGGCTGTTGAGAGAGGGAAAATTTTGAATGAAGACTTATCAACTACAGATTACATACTGAAGAAGGTGTTCCGAAAGGATGGTCCCCCCCTTGGTGTGGAGTTTGATTCTCTACCTTCTAGTTCATTTTGCCATTGTACAGATTCCAGAAACTCCCATCGTACTTGCCAAGAGAACCAAACATCTTCCAAAAGGAGAAAGGTGGTGGTGTCCAAGCCTGCTGTTTTACACCAGCAGTTTTGCAATAATAAGAGTGCTCCAGCAAAAATACACGGTATTGGAAAAGGTTTGATGACAGTCTGGAGGGCAACAAATCCCGGTGCTGGAGATTTTCCTACTGGCATTGATTTTGCTGATGGACAAGTTGCTGCTGTATCTCCAACTTCAACTTCTATACTAAGAAAGTCACTAATAAAAAAGAAAAAGCCACGAAAACAGTCATCCGTTACTAAATGGAAAAGTGTAGGTGGTAAATTGAATGATAAAAAGAAGCCTTCAAGAAAAAGGGGAAAGGTGGAATGTAATAAAGATGTGAATCAGAAGAAGCCAAATAAAGAGAAATGTGAACTTGCTCTAGAAGAAGGGAAATCTCAAGAACACCTTGATCAGTTTGCAATGCTGATGGATGATGAGGAGCTGGAGCTTCAAGAATCGCAGGCAGGACCAAATCCTGTGACATGCTCTGCTCATTTTGCTACCAATGGACTACATGGCTGTTCACTTTGCAAAGATTTGCTGGCCAAATTTCCTCCCAATGCTGTTAAGATGAAGCAACCATTCTGTATGCAACCTTGGGATTCTTCTCCAGAGCTTGTCAAGAAAATGTTCAAGGTCCTTCATTTTCTATATACTTACTCTGTAGTAGTTGATGTATGCCCCTTTACCCTTGATGAATTTGCTCAAGCATTTCATGATGAGGATTCTTTGTTGCTTGGAAAAGTTCATCTGGCCCTTCTCAACCTTCTTTTGTCTGATGTGGAAACAGAGCTGAGCAGTGGGTTTCTCCCTCATGTGATTAAAAACTGCAAGTTTCTTGGGTTACTTCAATCGGTTGGACAAAATGAGTTTGTGCTGAAGTTTTGGAAGAGATCTCTGAATCCTTTAACATGGACAGAAATACTGCGTCAAGTTTTGGTTGCAGCTGGTTTTGGTTCAAGAAAAGGTACATTGCGGAGGGAAGCCCTTGATAAGGAACTGAATCCTATGGTAAAGTATGGCTTACGTCCTGGTACTTTGAAGGGTGAACTGTTTAGTATTTTATCGAATCAAGGAAATAATGGTATGAAAGTTCCAGACTTGGCAAGGTGTGTGCAGATTTCTGAATTGAATCTTGCTGGCACGACTGATGAGCTGGAACTTCTAATATATTCTACCCTTTCAAGTGACATTACTTTATATGAAAAGATTTCTAGCTCTTCATATCGTCTACGCATTACTTCTCACACAAATGAAGCTGAAAATTTTCAATCAGATACTGATGACTCTGGAAGCATTGACGATGACTCTAAGGACAGCAGAAAATATAGCAGTAGCGATGATTCTGACTCTGATTCAGGAACTTCCAATTTAGGGAAACTGAATTATATGAACCATCATAAACAGAGAAATGGCATGTTGACTATATATACTGAAATTGATGAGAGCAATCCAGGAGAAGTATGGTTATTAGGATTGATGGAGGGTGAATATTCAGATTTAAGCATTGAAGAGAAGCTCAATGCCTTAATGGCTTTGGTTGATCTTGTTAGTGGTGGAAGCAGTATCAGAATGGAGGATCTTACAAAAGCGGTAGTAGAATATGTTCCTAACATCCATCATTATGGTTCTGGAGCAAAAATAAAGAGATCATATACAAAGCAACACAACTTGCCCACACCAGCACGGGGCCACTTTGGACAAATGCTTGGTGGAAAGGAAATAAATCCATCATCTGAGTTATGCCCAGTTGATTCTTCCACATCAATCTCAAAATTCCATGGGAAAGAAAAGTTCTCTAGCAAAAGAAAGGAGACAAGAGAAGCAGAAGTTGGGTTGGATTTACATCCTATGCAATCTGTCTTTTTGGGGCCTGATCGAAGGTATAATAGATACTGGCTTTTCTTAGGCCCTTGTAATGCAAATGATCCTGGTCACAAGAGGGTGTACTTTGAATCTTCTGAAGATGGTCACTGGGAGGTGATTGATACTGAAGAGGCTTTTTGTGCCTTGCTGTCAGTGTTGGATGGCAGGGGTAAGCGGGAGGCTTTTCTTCTTGCATCTTTAGAGAAACGGAAAGCTTCTCTCTGCCAAGAAATGTCAAGCAGAATAGCAATCCATTCTGGAAGCACGTCATTGACACAATATGATAGATCTGACCTGTATATGATTAGAGAAGATAGTTCTTCTCCAGTATCTGATATAGTAGACAACCCATGCGCAACTGATATTACCAATGATTTTTTGGCTTCATCTGGTGCCATAGTTCTTGGAGTTGGAAAGAAGGGAGAAGAGCAAAAACAAAGATGGCGCCGGCTCCAGGAATTTGATGCATGGATATGGAGTTCTTTTTACTCTGATCTTAATGCTGTAAAACATGGCAAGAGGACTTATCTTGATTCACTCGCTAGATGTGAAAGTTGTCATGATCTGTATTGGCGGGATGAAAAGCACTGTAAAACTTGTCATACCACTTTTGAGCTTGATTTTGATCTCGAAGAAAAATATGCGATTCATATAGCGACATGCAGGGAGAAAGAAGACAATGACATGTTTCCAAAGCATAAGGTGCTATCATCACAGTTACAGTCATTGAAAGCTGCAATTCACGCAATTGAGTCAGTCATGCCTGAAGATGCCTTAGTGGAGGCTTGGTCAAAATCTGCTCATAAGCTTTGGGTCAGACGCCTCAGACGCACTTCATATTTGACAGAGCTTTTGCAGGTTCTTGCTGATTTTGTTGGTGCCATCAAAGAGGACTGGTTGTGTCAGTCCGATGTTGTGCTAGGTTCTAATAATCTTTTGGAAGAAATTGTTGTATCATTTTCAACTATGCCCCAAACATCATCTGCAGTTGCACTCTGGTTGGTGAAGTTGGATGCCTTGATTGCACCCCATCTGGAGAGGGTTCAACTTCATTCTAAAAAGAGAACAAGAAATTAG 3558 0.407 MGTNEVAIIEDHGTINTNTNSIRRKTPLQLKTLESLYSEDNYPTQRVMKDYAAALGLTYKQVRGWFFERRRKEKNENGMGVSSSKKLVRAKNGIGVVAAKKIIRRVGLAAHCRGNMSSSSTYNRACLGAHHWHCFRNHDSRAVERGKILNEDLSTTDYILKKVFRKDGPPLGVEFDSLPSSSFCHCTDSRNSHRTCQENQTSSKRRKVVVSKPAVLHQQFCNNKSAPAKIHGIGKGLMTVWRATNPGAGDFPTGIDFADGQVAAVSPTSTSILRKSLIKKKKPRKQSSVTKWKSVGGKLNDKKKPSRKRGKVECNKDVNQKKPNKEKCELALEEGKSQEHLDQFAMLMDDEELELQESQAGPNPVTCSAHFATNGLHGCSLCKDLLAKFPPNAVKMKQPFCMQPWDSSPELVKKMFKVLHFLYTYSVVVDVCPFTLDEFAQAFHDEDSLLLGKVHLALLNLLLSDVETELSSGFLPHVIKNCKFLGLLQSVGQNEFVLKFWKRSLNPLTWTEILRQVLVAAGFGSRKGTLRREALDKELNPMVKYGLRPGTLKGELFSILSNQGNNGMKVPDLARCVQISELNLAGTTDELELLIYSTLSSDITLYEKISSSSYRLRITSHTNEAENFQSDTDDSGSIDDDSKDSRKYSSSDDSDSDSGTSNLGKLNYMNHHKQRNGMLTIYTEIDESNPGEVWLLGLMEGEYSDLSIEEKLNALMALVDLVSGGSSIRMEDLTKAVVEYVPNIHHYGSGAKIKRSYTKQHNLPTPARGHFGQMLGGKEINPSSELCPVDSSTSISKFHGKEKFSSKRKETREAEVGLDLHPMQSVFLGPDRRYNRYWLFLGPCNANDPGHKRVYFESSEDGHWEVIDTEEAFCALLSVLDGRGKREAFLLASLEKRKASLCQEMSSRIAIHSGSTSLTQYDRSDLYMIREDSSSPVSDIVDNPCATDITNDFLASSGAIVLGVGKKGEEQKQRWRRLQEFDAWIWSSFYSDLNAVKHGKRTYLDSLARCESCHDLYWRDEKHCKTCHTTFELDFDLEEKYAIHIATCREKEDNDMFPKHKVLSSQLQSLKAAIHAIESVMPEDALVEAWSKSAHKLWVRRLRRTSYLTELLQVLADFVGAIKEDWLCQSDVVLGSNNLLEEIVVSFSTMPQTSSAVALWLVKLDALIAPHLERVQLHSKKRTRN* 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1360 1185 MobiDBLite consensus disorder prediction 654 669 - -
Vvi19g1360 1185 Gene3D - 12 88 - -
Vvi19g1360 1185 Pfam Homeodomain 25 75 IPR001356 GO:0003677
Vvi19g1360 1185 PANTHER HOMEOBOX PROTEIN SIX 300 1175 - -
Vvi19g1360 1185 ProSiteProfiles 'Homeobox' domain profile. 26 76 IPR001356 GO:0003677
Vvi19g1360 1185 Pfam DDT domain 410 465 IPR018501 -
Vvi19g1360 1185 MobiDBLite consensus disorder prediction 626 669 - -
Vvi19g1360 1185 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 824 898 IPR028941 -
Vvi19g1360 1185 MobiDBLite consensus disorder prediction 639 653 - -
Vvi19g1360 1185 ProSiteProfiles DDT domain profile. 409 468 IPR018501 -
Vvi19g1360 1185 SMART testlast3 409 468 IPR018501 -
Vvi19g1360 1185 CDD homeodomain 23 77 IPR001356 GO:0003677
Vvi19g1360 1185 FunFam Homeodomain-like transcriptional regulator 12 92 - -
Vvi19g1360 1185 SUPERFAMILY Homeodomain-like 19 76 IPR009057 -
Vvi19g1360 1185 MobiDBLite consensus disorder prediction 296 320 - -
Vvi19g1360 1185 SMART HOX_1 19 80 IPR001356 GO:0003677
Vvi19g1360 1185 MobiDBLite consensus disorder prediction 276 320 - -
Vvi19g1360 1185 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 691 730 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1360 Vvi-Chr19 22688699 22717134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1360 25 183 Homeobox Transcription Factor Family AT5G44180 28.571 3.10e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vvi19g1360 WSD 2.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1360 - - vvi:100241125 2311.18