Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1343 ATGGTGCTTGAATCGTTAGACCTCTCTTCGAACAAGCTCAGTGGGAGAATTCCAAGGGAGTTGACAAGTCTAACGTTTCTTGAAGTCCTAAATCTTTCAAAAAATCATCTCACTGGAGTCATTCCTCGAGGCAACCAATTTGATTCATTCACAAATAATTCATATAGTGGGAATATAGGATTATGTGGATTTCCCTTATCTAAGAAATGTGTAGTTGATGAAGCACCACAACCTCCCAAAGAAGAGGAGGTGGAATCTGATACTGGATTTGATTGGAAAGTCATATTGATGGGGTATGGCTGTGGACTAGTAGTTGGATTGTCTATTGGGTGCCTCGTCTTCTTAACAAGAAAGCCTAAATGGTTTGTAAGAATGATTGAAGGAGATAGACACAAGAAGGTTAGAAAGTCAACAAGGAGCACTTGTAGGCATGGAGCAAGAAGAAGTTAG 450 0.4 MVLESLDLSSNKLSGRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDSFTNNSYSGNIGLCGFPLSKKCVVDEAPQPPKEEEVESDTGFDWKVILMGYGCGLVVGLSIGCLVFLTRKPKWFVRMIEGDRHKKVRKSTRSTCRHGARRS* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1343 149 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 2 114 IPR045273 -
Vvi19g1343 149 SUPERFAMILY L domain-like 3 67 - -
Vvi19g1343 149 Gene3D Ribonuclease Inhibitor 2 77 IPR032675 -
Vvi19g1343 149 PRINTS Leucine-rich repeat signature 3 16 - -
Vvi19g1343 149 PRINTS Leucine-rich repeat signature 24 37 - -
Vvi19g1343 149 Pfam Leucine Rich Repeat 27 43 IPR001611 GO:0005515
Vvi19g1343 149 Pfam Leucine Rich Repeat 3 23 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1343 Vvi-Chr19 22499713 22500162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1343 3 133 Receptor kinase-like Gene Family AT2G33060 42.748 3.14e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1343 - - vvi:100261089 290.426