Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1333 ATGGGGAGAGGCAGAGCCCCTTGTTGTGATAAGAGTAAGGTGAAGAGAGGGCCATGGAGCCCTGCTGAGGACATGAGGCTTGTGTCTTTTATTCAGAAGAATGGTCATGAGAATTGGAGGTCTCTGCCTAAACAAGCAGGACTGTTGCGATGCGGGAAAAGTTGTCGATTGCGATGGATTAATTACCTAAGGCCTGACGTTAAGCGCGGAAACTTCAGTAAGGAGGAAGAGGATGCCATAATCAAGCTCCATCAGACCTTGGGCAACAAGTGGTCAAAGATTGCGTCGCATTTTCCAGGCAGGACGGATAATGAGATCAAGAATGTATGGAACACTCATTTGAAGAAACGTCTGGTGGCTCAAAAGAATGATAAACTCTATTCATCTTCATCAAATACTAATCCAATTAGCAATAGTCCTAACCCTAGCCCTAGTACTAACAATGAGCCCAAGGAGCCATCAAGCTCTTCTACTAACTCATCACCAAACATTGAAACACAAGTGGACTCGATAATTTTCGACTTTGTAGGAACTTATGGCATGCTAGACGAGGTGAACAAGCCGGGCGAAGAACTGGAAATCCCATTGGAGACCGACACCAGTTTTTGGGAGATGTTGGACAGCCTAGGCTCATTCCAGTACAACAATGAAGTAGAGGGAAGCCAGAGCTCTATCATTATTGCAGACCATGAACAAGGAAATGATAATGGAGATGCAGCCCATGAGAGCAGGAGTTGGCTGAGGTACATAGAGAATGAACTTGGACTAGAGGAAACAAGTGATGAAACCATGGAAACATGTACTAAAATTCAGCTTAATGGAGATGAGCAGCCAGCCAGTGAGATCATTAGTTTCCTAGAGGATGACGGTGGGAAGCTAGAAGACAATCCAAGTATTATAATTTTAATTTCTTCTAATCTATGGTATGATGATGACCCCTTTGTATATTTGAAAATTAATCTCTTGAATTTTATGAAGTTGGAGAGTGGGTTGGTGAAATTCTCCACTTACCATCATAGAACCATACAATTTTGTGACACCCAATTTCTAAGTGTCCCCACACTTGGAAAGAATGAGAGGATAAAAGTATATTGA 1095 0.4256 MGRGRAPCCDKSKVKRGPWSPAEDMRLVSFIQKNGHENWRSLPKQAGLLRCGKSCRLRWINYLRPDVKRGNFSKEEEDAIIKLHQTLGNKWSKIASHFPGRTDNEIKNVWNTHLKKRLVAQKNDKLYSSSSNTNPISNSPNPSPSTNNEPKEPSSSSTNSSPNIETQVDSIIFDFVGTYGMLDEVNKPGEELEIPLETDTSFWEMLDSLGSFQYNNEVEGSQSSIIIADHEQGNDNGDAAHESRSWLRYIENELGLEETSDETMETCTKIQLNGDEQPASEIISFLEDDGGKLEDNPSIIILISSNLWYDDDPFVYLKINLLNFMKLESGLVKFSTYHHRTIQFCDTQFLSVPTLGKNERIKVY* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1333 364 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vvi19g1333 364 SMART sant 15 65 IPR001005 -
Vvi19g1333 364 SMART sant 68 116 IPR001005 -
Vvi19g1333 364 Gene3D - 71 139 - -
Vvi19g1333 364 Gene3D - 16 68 - -
Vvi19g1333 364 FunFam MYB transcription factor 70 143 - -
Vvi19g1333 364 FunFam Transcription factor RAX3 9 69 - -
Vvi19g1333 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 211 - -
Vvi19g1333 364 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Vvi19g1333 364 MobiDBLite consensus disorder prediction 124 164 - -
Vvi19g1333 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Vvi19g1333 364 CDD SANT 71 114 IPR001005 -
Vvi19g1333 364 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vvi19g1333 364 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Vvi19g1333 364 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vvi19g1333 364 CDD SANT 18 63 IPR001005 -
Vvi19g1333 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1333 Vvi-Chr19 22358835 22361459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1333 1 262 MYB Transcription Factor Family AT1G79180 43.887 8.46e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi19g1333 Myb_DNA-binding 4.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1333 K09422 - vvi:100246160 535.413