Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1330 ATGGGAATGATGGGAAAGGAGAGAGGGATGGGGAAGAAGAAGAAGAGGCAGAAGATTATCCTGCCGCCGGATCTCCCACCAGAGATTCCCGAGGATGAAGTCGAAGTTTCCGATGAGGATTTGCAGTTTTTCGATGAGAATCGAGACTACGCCGGCTTCGTTTCCACTTTGGACACTCATTCGATCACTAGGCATGTTTCACGTGTTGCCAATGTGAAAGAAGATGCTTTGGAGGCTTTATATGAGAGGCGGTTGAAGAAGAAGGCGGCAGAGAAACAGAAAGAGGAGAGTGCGCTTCAAGTTGATCCTGTAGATGCCCTTCCTGTCAAAACCTTAGATGGAGAACTATACTACAGGACAGCACCAAAGAAACCAAAAGATTCTGAAAATGCAGCTGATAAATATGAAGCAGATGGGGAGGATGGAAATGAAGGTGTAGATAAAAGTATAGTGAAGCTGACAAAAGCAGAACGGAGGGCAAAGCTTAAGAAGAGTAAGAAAGAAGCAAAGAAACAAGGGAAGGAACTTGATAAAACAGAGGATGTGCAACAAACACCACAAGCTGCTGCGTTGGCTGAGGTAAAACAAGATCTCACAGCTGAAGAAACATTTGAAAGTAAGAAGCGCAAACTAGCAGAGTTGGGAATGGCACTGCTTGCAGATCCAGAAGCTAATATTAAAACCTTAAAAGAGATGTTGCAAATCTCTAAAGATGATGATCAGGCTATTGTCAAGCTTGCGCTGCTGTCTTTGTTGGCTGTTTTCAAAGACATTATTCCTGGCTACCGTATCAGGCTTCCTACTGAAAAGGAGCTGGAGATGACTGTATCAAAGGAAGTTAAAAAGAAGCGGTACTATGAATCCACACTTTTATCTACATACAAGGCATATCTGCAGAAGTTGATGGCATTGGAACGGCAGGCCTCATTTCAGCATATTGTTTATCGCTGTATCTGTACTTTGCTAGATGCAGTTCCCCACTTCAACTTCCGTGAGAGCTTGTTAGCTGCAGTTATAAAAAACATAGGCTCCTCCGATGATGTAGTAAGGAAACTTTGTTGTGCTACTGTTAAATCACTTTTTACCAACGATGGGAAACATGGAGGTGAAGCTACTGTGGAGGCTGTTCAATTGATTGCAGATCATGTGAAAGCTCATGATTGCCAATTGCACCCTGATTCCATTGAGGTTTTCATGTATTTGACGTTTGATGAAGATCTTGGGAGGCCTGAAAACCCAAATGAGGATAATAAAGTCAAAAGCAAGAAAAATAAGAAGCGAAAGAACCGTGAGGAGTCAGGTGAGCTGCAAGAGAGAGACAAAAAGAAAAATAGGCAAGAATTGGTCACAAAGATGAGAGAAGAGGTCAATGCCGACTTTAGGGCTGCTTCTTTTGCCCCAGATGTTAAGGAGCGGAGAATGATGCAGTCGGAGGCACTTTCTGCTGTATTTGAGACATACTTCCGCATCTTGAAGCATAGTATGCGGCAAATTTCAGTCAGATCTGAAGAGAATGGGAGTTCATTACCTGGTGCATCTGGGAATCATCCCCTACTTGTTCCATGTTTGATAGGATTAGGAAAATTCTCTCACCTGATTGACTTAGATTTTATGGGCGATCTCATGAACTGTCTGAGAAAGCTTGCCTGTGGCAGCAGCAACTCTGATGGTTCCTGCAATAAACTTTTGACTGTATCTGAACGTCTTCGATGCTGCATTGTTGCCTTCAAAGTGATGAGGAACAATCTTGAGGCCTTGAATGTTGATTTACAGGAATTCTTCATCCAGCTTTACAATCTTAGTATTGAGTACAGGCCCGGAAGAGATCAGGGTGAGGTGTTAGCCGAAGCACTGAAGATCATGCTGTGTGATGATAGACAGCATGACATGCAAAAGGCTGCTGCTTTTATAAAACGATTGGCTACATTCTCGTTATGCTTTGGGTCTGCGGAGTCCATGGCTGCCTTGGTTACTTTAAAGCATCTTCTTCAGAAGAATGTTAAGTGCCGGCATCTGTTGGAAAATGATGCAGGAGGTTGTTCAGTTTTGGGTTCCATCGTGAAATATCAGCCATACGCCTCTGACCCAAGCCAAAGTGGTGCACTCGCCTCAGTCCTTTGGGAACTCAATCTTCTATCCAAGCACTACCACCCAGCTGTTTCAACAATGGCTTCAAACGTCTCAGGCATGAGCACTGGTCACAACCAAGTCTATCTTGCCACGGTTTCTCCTCAACAAGCCTTTGCAGACTTATCACTTGAACACGAGTCATTCATCAATCCAAAGAACATCGTCATGAAATCAAATCATAAGAGAAAACGAGGAAGCGGGTCATCTGGAGCAGCTAGCATCAACCCAACCCCAGATGCCGCTACTCCAATCGATGAAGATGGGTTGAGGAAGAAACTTTCAGAGCATTTCACAATTCTGCACGACATCAAGGAGAACGAGAGATTAAGGGGTGAGTTAGATCGTGTAACACTATCCCTGCAGGTATACGAAGAACATAAGAATCGAAAGAAGAGAAAACATGCCTCAAAACCCAAGAAAAATGCAGAAAAAACTGCCAGTTGA 2574 0.4363 MGMMGKERGMGKKKKRQKIILPPDLPPEIPEDEVEVSDEDLQFFDENRDYAGFVSTLDTHSITRHVSRVANVKEDALEALYERRLKKKAAEKQKEESALQVDPVDALPVKTLDGELYYRTAPKKPKDSENAADKYEADGEDGNEGVDKSIVKLTKAERRAKLKKSKKEAKKQGKELDKTEDVQQTPQAAALAEVKQDLTAEETFESKKRKLAELGMALLADPEANIKTLKEMLQISKDDDQAIVKLALLSLLAVFKDIIPGYRIRLPTEKELEMTVSKEVKKKRYYESTLLSTYKAYLQKLMALERQASFQHIVYRCICTLLDAVPHFNFRESLLAAVIKNIGSSDDVVRKLCCATVKSLFTNDGKHGGEATVEAVQLIADHVKAHDCQLHPDSIEVFMYLTFDEDLGRPENPNEDNKVKSKKNKKRKNREESGELQERDKKKNRQELVTKMREEVNADFRAASFAPDVKERRMMQSEALSAVFETYFRILKHSMRQISVRSEENGSSLPGASGNHPLLVPCLIGLGKFSHLIDLDFMGDLMNCLRKLACGSSNSDGSCNKLLTVSERLRCCIVAFKVMRNNLEALNVDLQEFFIQLYNLSIEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFIKRLATFSLCFGSAESMAALVTLKHLLQKNVKCRHLLENDAGGCSVLGSIVKYQPYASDPSQSGALASVLWELNLLSKHYHPAVSTMASNVSGMSTGHNQVYLATVSPQQAFADLSLEHESFINPKNIVMKSNHKRKRGSGSSGAASINPTPDAATPIDEDGLRKKLSEHFTILHDIKENERLRGELDRVTLSLQVYEEHKNRKKRKHASKPKKNAEKTAS* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1330 857 Pfam Nucleolar complex-associated protein 207 297 IPR011501 -
Vvi19g1330 857 MobiDBLite consensus disorder prediction 409 446 - -
Vvi19g1330 857 Coils Coil 159 182 - -
Vvi19g1330 857 Coils Coil 816 836 - -
Vvi19g1330 857 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 7 834 IPR016903 -
Vvi19g1330 857 MobiDBLite consensus disorder prediction 832 857 - -
Vvi19g1330 857 MobiDBLite consensus disorder prediction 428 446 - -
Vvi19g1330 857 MobiDBLite consensus disorder prediction 1 31 - -
Vvi19g1330 857 MobiDBLite consensus disorder prediction 118 187 - -
Vvi19g1330 857 MobiDBLite consensus disorder prediction 764 795 - -
Vvi19g1330 857 Pfam CBF/Mak21 family 569 724 IPR005612 -
Vvi19g1330 857 PIRSF Noc3 794 856 IPR016903 -
Vvi19g1330 857 PIRSF Noc3 10 826 IPR016903 -
Vvi19g1330 857 MobiDBLite consensus disorder prediction 118 156 - -
Vvi19g1330 857 SUPERFAMILY ARM repeat 228 609 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1330 10 823 Core DNA Replication Machinery Family AT1G79150 61.876 0.0 977
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1330 K14834 - vvi:100263319 1545.41