Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1326 ATGATGATGGATTTCCAAGTGGTGGTCCTAGCTGGCGGGACTTCAAAGAAACTCGTCCCTCTTGTTTCCAAGGAAGTTCCAAAAGCACTGCTTCCAGTAGCAAACCGACCAGTTCTTTCTTATGTTTTGGAGCTCCTTGAACACAGCAACCTGAAGGATCTCATCGTTGTTGTTGAAGGGCAGGATGCCGCTCTGCGTGTTGGGGGTTGGATATCAGGTGCTTATGTTGATCGGCTACATGTTGAGGTTGCTGCAGTTCCTGAGGATGTTGGAACTGCTGGTGCACTTCGGGCCATTGCACACCACTTGACCGCTAATGACATTTTGGTGGTAAGTGGTGATCTTGTTTGTGATGTTTCCCCTGGGGCAGTGGCAGCAGCTCATAGACGGCATGGTGCTGCAGTGACCGCTATGCTTTGCTCTGTTCCTGTCAGTGGACCATTGGAGTCAGGATCCTCTAGTGGAAAGGACAAAACCAAGAAACCTGGGTGTTGCAACATTATAGGGCTGGATCCCACTAAACAGTTCCTATTATACATTGCTACAGGACCAGAAATTGAGAGAGATATCCGAGTTCAAAAGAGCATACTCCGTGCAGTAGGCCAGATGGAAATTCGAGCTGATCTCATGGATGCTCATTTGTATGCATTCAAGAGGGCTGTTCTGCAAGAAGTTTTAGATCAAAAGGATGCATTTCAAAGCTTACAGCAAGATGTTTTACCTTATCTTGTCCGGAGCCAGCTGAGGTCGGAACTATCGTTGAATGGTGCACCACACACAGAAGAAAATGGTCACGACAAGGTTGTTCCTGGGATCAACCAAGTAATGCTTTCTCAACTACTTGCTAAGACATCTACACCAAGTTTTCATGAACTTTATGCTATGGGCCCTAATGGATCTGCACCTGTTCGAAGAACCCACAAATGCTGTGTTTATATTGCCAGCCAGGACAAGTACTGTGCCCGTTTAAATTCTATTCAAGCTTTCAGTGACATAAATCGAGATGTCATAGGCGAGGCAAGTCACCTGTCAGGGTATTCCTTCTCTGCCCAAAACAACATCATCCACCCCTCAGCAGAGCTCGGATCAAAAACAACCGTTGGACAAAATTGTATGCTAGGGGAAGGTTCACAACTGGGGGACAAATGTAGTGTGAAGCGATCAGTTATTGGCCGCCACTGTCGGATAGGTTCTAATGTAAAGGTCGTTAATTCGGTAGTTATGAACCATGTTACAATCAGTGATGGTTGTTCAATCCAAGGTTCTGTAATTTGCAGCAATGCTCAGCTTCAGGAGCGAGTTGTACTTAAAGATTGTCAGGTTGGAGCAGGGTTCGTTGTCACTTCTGGCAGCGAATACAAGGGCGAGTTCCTGGCAAAAAAAGAGAGATAA 1392 0.4619 MMMDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLELLEHSNLKDLIVVVEGQDAALRVGGWISGAYVDRLHVEVAAVPEDVGTAGALRAIAHHLTANDILVVSGDLVCDVSPGAVAAAHRRHGAAVTAMLCSVPVSGPLESGSSSGKDKTKKPGCCNIIGLDPTKQFLLYIATGPEIERDIRVQKSILRAVGQMEIRADLMDAHLYAFKRAVLQEVLDQKDAFQSLQQDVLPYLVRSQLRSELSLNGAPHTEENGHDKVVPGINQVMLSQLLAKTSTPSFHELYAMGPNGSAPVRRTHKCCVYIASQDKYCARLNSIQAFSDINRDVIGEASHLSGYSFSAQNNIIHPSAELGSKTTVGQNCMLGEGSQLGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTISDGCSIQGSVICSNAQLQERVVLKDCQVGAGFVVTSGSEYKGEFLAKKER* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1326 463 Pfam Nucleotidyl transferase 8 147 IPR005835 GO:0009058
Vvi19g1326 463 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA 3 462 - -
Vvi19g1326 463 SUPERFAMILY Nucleotide-diphospho-sugar transferases 6 428 IPR029044 -
Vvi19g1326 463 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 346 IPR029044 -
Vvi19g1326 463 Gene3D Hexapeptide repeat proteins 347 456 - -
Vvi19g1326 463 CDD LbH_eIF2B_gamma_C 372 452 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1326 5 452 Eukaryotic Initiation Factors Gene Family AT2G34970 23.577 4.43e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1326 K03241 - vvi:100247923 894.419