Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1323 ATGGCAAACAATGAGCTAAGGATCCCACTGGCACGAACCACTGGATCATCAAGTTTCATTAATGCTTGCTTCAATGGCATAAATGCATTCCTTGGAATTAGTTATCTAACAGTCCCTTATGCCCTCTCAACTGGAGGTTGGTTGAGTTTGATGCCGTTTTCCTTAGTTGCAATTATGACCTTTTACACTGGAATTTTACTAAAACGATGCATGGAAGCCGCTGATCATCCATCTATTACTAGCTACCTTGATATTGCAGGGCATGCATTTGGTACAAAAGGAAGAATCACAGTCATGATCATTATGAATTTGGAAATGTATCTTGTTGCTGTCGGGCTTTTGATACTGGAGGTTGACAACTTGCGTAAGCTATTTCCAGAATTCATGATCAACCTTGGGGAATTAACAGTAGATGGAAGACAGTCATTTGCTATAATCACATTCCTAATAATCTTGCCAACAATATTTTTAACCGACTTGAGCATTCTCTCCTATATCTCTGCCACTGGATTTTTTTCATGCCTTGTCATCCTTGTCTCCATTTTTTGTGTCGGTGCATTCAATGGTGTTGGCTTTCATGCGAAGGGATCGATACTGTTAAATGTGGACCGCCTACCTATTACAGTTAGCTTGTATATTGTTTCCTTTGGTGGACATCCAGTCATCCCTCCAATATATGTATCAATGCGAGACCGCTACCAGTTCAGTAAGGTCTTACTATTCAGTTTTGTTCTTGCAACACTCACCTACATGTCAATGGCCATAGTAGGATATCTAATGTATGGAGACAGGGTTGAATCAGAAATAACTTTGAATCTACCAACAAGTAAAGTTAGTGCAAGAATCGCAATTTATACGACTTTAGTTATTCCAATCGCCAGATATGCATTGGTATTAACCCCAATTGCAACTGCCATTGAAGGCGGGATTTCAGAAAATTACAAGAATAAGAGAGCTGTTAGATTATTTATAAGAGTAGCATTGCTGTTTAGCACAGCTATTGTGGCATATTATTTTCCCTATTACGAGTCCCTGATGGCAATTGTTGGATCAATTTTTGTCGTTTCGGGTTCTTTTCTGCTCCCATGCTTGTGTTACTTGAAGATTTCTGATCTCAATTGGGGTTGGAACTGTGAGCAGATAGGCATTAGGGGGATAATTCTATTTGGAACATTTGCTGGGGTTTTAGGGACTTATTCATCTATTTCTGAACTTGTAAGATAA 1224 0.3913 MANNELRIPLARTTGSSSFINACFNGINAFLGISYLTVPYALSTGGWLSLMPFSLVAIMTFYTGILLKRCMEAADHPSITSYLDIAGHAFGTKGRITVMIIMNLEMYLVAVGLLILEVDNLRKLFPEFMINLGELTVDGRQSFAIITFLIILPTIFLTDLSILSYISATGFFSCLVILVSIFCVGAFNGVGFHAKGSILLNVDRLPITVSLYIVSFGGHPVIPPIYVSMRDRYQFSKVLLFSFVLATLTYMSMAIVGYLMYGDRVESEITLNLPTSKVSARIAIYTTLVIPIARYALVLTPIATAIEGGISENYKNKRAVRLFIRVALLFSTAIVAYYFPYYESLMAIVGSIFVVSGSFLLPCLCYLKISDLNWGWNCEQIGIRGIILFGTFAGVLGTYSSISELVR* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1323 407 Coils Coil 405 407 - -
Vvi19g1323 407 Pfam Transmembrane amino acid transporter protein 16 402 IPR013057 -
Vvi19g1323 407 PANTHER OS05G0424000 PROTEIN-RELATED 25 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1323 Vvi-Chr19 22155094 22156601 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1323 3 406 Amino Acid or Auxin Permease AAAP Family AT3G28960 44.307 4.02e-116 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1323 K15015 - vvi:100252952 791.571