Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1321 ATGGCGAATAACGAGCTAAGGATCCCTCTGATTCGAACTCCTGGCTCATCAAGTTTCATGAAAGCTAGTTTTAATGGCACAAATGCATTCCTGGGAATTGGTTTTCTAACAATCCCTTATGCCCTCTCAAGTGGAGGTTGGTTGAGTTTGGTGCTCTTCTTCTCAATTGCAGCTATGACCTTTTACACCGGGCTTTTACTAGTGCGTTGTATGGAAGTTGATCCATCTATTTTAAGTTATTATGATATTGCAGAGCGTGCATTTGGTATGAAAGGAAGAATGATAGTCATGTTTATGATGAATGCAGAGATGTACCTTATTGCAACAGGGTTTTTGATATTAGAAGGTGACAACTTACAAAAGCTTTTTCCAGAGTTCATGATCAAACTTGGGGAATTGACACTAGATGGAAAACAGTCATTCGTTATAATCACAGGACTACTATTTTCAGCATTAATGTTGTTAACTGACTTGAGTATGCTCTCCTATATCTCGGCCACTGGAGTATTCTCTTGCCTTGTCATTGTCGTCTCCATCTTTTGTGTTGGTGCATTCGACGGTGTTGGTTTTCATGCAAAAGGAAGTGTTCTGTTAAATCTCGATACTCTTCCTACAGCAGTTGGCTTATATATTGTTTCATTTGGTGGACACCCAGTCATCCCTTCAATATACATGTCTATGCGAGATTCCTGCCAGTTCAGTAAGGTCTTGGTGTTTAGTTTTATTCTGGCAACTCTCAACTACATGACAATAGCGATATTGGGCTATCTTATGTATGGAGATGGTATTGAATCAGAAATTACTTTGAATCTACCAACCAAAGTTAGTGGAAGAGTTGCAATATATACAACTTTACTTATTCCAGTTACTAGATATTCCTTGTTGGTAGCCCCAATTGCAACTGCCATTGAAGGTGGACTATCAGAAAAGTACAAGAATCAGAAACCGGTGAGATTGCTCATAAGAGTAGCATTGCTGATCAGTACTGTTATTGTGGCCTGTGTCTTCCCATATTACGAGTCCTTGATGGCCATTGTTGGGTCAGTTTTTGTTGTTTCGGCTTCTTTTCTGCTCCCATGCTTGTGCTACTTGAAGATTTCTGATCTCAATTGGAATTGGAACTGTGAGCAGATGGGCATTGTTGGGATAATTGTATTTGGAATTTTGGCTGGGGTTTTGGGGACTTATTCATCTATTTTTGAACTTCTAACATAA 1215 0.3934 MANNELRIPLIRTPGSSSFMKASFNGTNAFLGIGFLTIPYALSSGGWLSLVLFFSIAAMTFYTGLLLVRCMEVDPSILSYYDIAERAFGMKGRMIVMFMMNAEMYLIATGFLILEGDNLQKLFPEFMIKLGELTLDGKQSFVIITGLLFSALMLLTDLSMLSYISATGVFSCLVIVVSIFCVGAFDGVGFHAKGSVLLNLDTLPTAVGLYIVSFGGHPVIPSIYMSMRDSCQFSKVLVFSFILATLNYMTIAILGYLMYGDGIESEITLNLPTKVSGRVAIYTTLLIPVTRYSLLVAPIATAIEGGLSEKYKNQKPVRLLIRVALLISTVIVACVFPYYESLMAIVGSVFVVSASFLLPCLCYLKISDLNWNWNCEQMGIVGIIVFGILAGVLGTYSSIFELLT* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1321 404 Pfam Transmembrane amino acid transporter protein 16 399 IPR013057 -
Vvi19g1321 404 PANTHER OS05G0424000 PROTEIN-RELATED 22 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1321 Vvi-Chr19 22137647 22139255 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1321 15 403 Amino Acid or Auxin Permease AAAP Family AT3G28960 46.154 1.28e-117 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1321 K15015 - vvi:100242701 732.25