Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1315 ATGGATTGTGTAAGCCCCATCCTGGATGTCGCCACTCGCTTGTGGGATTGCACTGCTAAGCGTGCTGTTTACATCCGTCATCTCCCACAAAATCTCAACTCTTTGAGAACTGAAATGGAGGAACTCAAGAACCTGTACGAAGATGTGAAGGAAAGGGTGGAACGTGAAGAGAAACGTCAGAAGAAGCGTCTTCGTGTAGTTGATGGCTGGCTCCGCGGAGTAGAAGCCATGGAAAAAGAAGTGCAGGAAATATTGGCAAAAGGTGATGAAGAAATCCAGAAGAAATGTCTCGGAACCTGTTGTCCTAAAAACTGTGGCGCTAGCTATAAGCTTGGCAAGATGGTACTTGAAAAGATGGATGCTGTGACGGTAAAGAAGAGGGAGGGCTCAAATTTCAGTGTAGTTGCTGAACCTTTGCCTATTCCTCCCGTGATCGAGAGGCAGCTGGACAAGACTGTGGGCCAAGATTTGTTGTTTGGGAAGGTCTGGAAATGGCTCCAAGATGATGGAGAGAAGGTAAGCAGTATCGGATTATATGGAATGGGGGGTGTGGGCAAAACCACCCTCTTGACCAGGACCAACAATGAGCTCCACAAAACCAGGGTTGAATTTGATGCAGTGATTTGGGTGACTGTGTCCAGACCAGCCAATGTGGAAAAGGTTCAGCAAGTTCTTTTCAATAAATTGGAGATTCCCAAAGATAAATGGGAAGGTAGGAGTGAGGATGAAAGGGCAGAAGAAATATTCAATGTCCTGAAGACAAAGAAATTTGTGCTCTTGTTAGATGACATATGGGAGCGGCTGGATCTATCCAAAGTTGGTATTCCTCCTCTGAATCATCAAGATAAGTTGAAGATGGTATTTACAACGCGATCTAAACAAGTATGCCAAAAGATGGAAGCTACCAAGAGCATTGAAGTGAATTGCCTCCCATGGGAGGATGCTTTTGCTCTGTTTCAGACCAAGGTAGGAGCAGACACTATAAGTTCTCATCCAGATATACCAAAGCTGGCGGAGATGGTTGCCAAAGAGTGTGACGGCTTACCACTTGCCCTCATCACCACAGGGCGAGCAATGGCGGGAGCAAAAACACCCGAGGAATGGGAGAAAAAAATACAAATGTTGAAGAATTATCCAGCAAAGTTTCCAGGTACAGAGGAGGATTTGTTTCGAGTATTAGCAATCAGTTATGATAGCCTGCCCGATGAAGCCATCAAATCGTGTTTCCTATATTGCTCTTTATTTCCGGAGGATTATGAAATCTCTCATCGAAAACTTATACAACTTTGGATCGGGGAGGGTTTTCTGGATGAATATGACAACATACAAGAAGCAAGAAATCAAGGAGAAGAAGTTATTAAAAGTTTACAGCTTGCATGTTTATTGGAAAATGTCATATCTCCCGTAAATGAAGAAGGTGAAAAAGACGAATATTTGAAGATGCATGATGTTATTCGTGATATGGCTTTGTGGTTGGCTGGCGAAAACGGGAAGAAGAAGAACAAATTTGTGGTAAAAGATGGAGTTGAATCGATTAGAGCTCAGGAAGTTGAAAAATGGAAAAAGACACAAAGGATATCATTGTGGGATTCCAACATTGAAGAACTCAGGGAACCACCATATTTCCCTAATATGGAGACCTTTTTGGCATCATGTAAAGTTTTGGACTTGTCAAACAATTTTGAACTTAAGGAGTTACCTGAGGAGATTGGAGACTTAGTTACCTTGCAATATCTTAATTTGTCGAGGACAAGTATTCAATACTTACCTATGGAGCTCAAGAACTTGAAAAAATTAAGGTGCTTGATATTGAAAAATATGTATTTTCTTAAGCCACTTCCATCTCAAATGGTATCGAGTCTTTCCTCTTTGCAATTGTTTAGTAGTTATGACACTGCAAACTCATACTATATGGGAGATTATGAAAGAAGGTTATTAGAAGAGTTAGAGCAGTTGGAACACATTGATGATATATCCATCGACCTTACAAATGTATCATCCATCCAAACATTATTAAACTCCCACAAGTTGCAAAGATCCATAAGATGGCTACAATTAGCTTGTGAGCATGTGAAACTGGTCCAACTATCCCTTTATATAGAGACACTCCGTATTATAAATTGTTTTGAATTGCAAGATGTGAAAATCAATTTTGAAAAGGAAGTGGTGGTCTACTCAAAATTCCCAAGGCACCAATGCTTGAACAACCTTTGTGATGTCTACATATCTGGATGTGGTGAACTGTTGAATTTGACATGGCTTATTTTTGCTCCAAGCCTTCAATTTCTAAGTGTTTCAGCATGTGAATCAATGGAAAAAGTGATAGATGATGAAAGGAGTGAAATATTAGAAATTGCAGTAGATCATTTGGGCGTATTCTCGAGACTCAGATCTCTCGCTTTGTTTTGTTTACCAGAGCTAAGAAGTATACATGGACGTGCCCTAACTTTTCCATCTTTAAGATACATCTGTGTGTTTCAATGTCCAAGTTTGAGGAAGCTGCCATTTGATTCCAATATTGGAGTGAGCAAGAAATTGGAGAAAATCAAGGGAGAACAAGAATGGTGGGATGAATTGGAGTGGGAGGATCAAACCATTATGCACAAACTCACTCCATATTTTCAATCCGATTCGTCTCATTACAAGTGGAACGCATCCAGGGAGAAGGGGGTATATACAGTGCAACAAAGGAATTTTTACAATTTTTGCGAAGTGCTTGTGATGATGCTGGGGCTCTCCTTGTTTTCGATGAGGTTCAATGTGGTCTAG 2769 0.4085 MDCVSPILDVATRLWDCTAKRAVYIRHLPQNLNSLRTEMEELKNLYEDVKERVEREEKRQKKRLRVVDGWLRGVEAMEKEVQEILAKGDEEIQKKCLGTCCPKNCGASYKLGKMVLEKMDAVTVKKREGSNFSVVAEPLPIPPVIERQLDKTVGQDLLFGKVWKWLQDDGEKVSSIGLYGMGGVGKTTLLTRTNNELHKTRVEFDAVIWVTVSRPANVEKVQQVLFNKLEIPKDKWEGRSEDERAEEIFNVLKTKKFVLLLDDIWERLDLSKVGIPPLNHQDKLKMVFTTRSKQVCQKMEATKSIEVNCLPWEDAFALFQTKVGADTISSHPDIPKLAEMVAKECDGLPLALITTGRAMAGAKTPEEWEKKIQMLKNYPAKFPGTEEDLFRVLAISYDSLPDEAIKSCFLYCSLFPEDYEISHRKLIQLWIGEGFLDEYDNIQEARNQGEEVIKSLQLACLLENVISPVNEEGEKDEYLKMHDVIRDMALWLAGENGKKKNKFVVKDGVESIRAQEVEKWKKTQRISLWDSNIEELREPPYFPNMETFLASCKVLDLSNNFELKELPEEIGDLVTLQYLNLSRTSIQYLPMELKNLKKLRCLILKNMYFLKPLPSQMVSSLSSLQLFSSYDTANSYYMGDYERRLLEELEQLEHIDDISIDLTNVSSIQTLLNSHKLQRSIRWLQLACEHVKLVQLSLYIETLRIINCFELQDVKINFEKEVVVYSKFPRHQCLNNLCDVYISGCGELLNLTWLIFAPSLQFLSVSACESMEKVIDDERSEILEIAVDHLGVFSRLRSLALFCLPELRSIHGRALTFPSLRYICVFQCPSLRKLPFDSNIGVSKKLEKIKGEQEWWDELEWEDQTIMHKLTPYFQSDSSHYKWNASREKGVYTVQQRNFYNFCEVLVMMLGLSLFSMRFNVV* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1315 922 FunFam Probable disease resistance protein At5g66910 309 396 - -
Vvi19g1315 922 SUPERFAMILY L domain-like 470 848 - -
Vvi19g1315 922 Gene3D - 139 309 IPR027417 -
Vvi19g1315 922 Coils Coil 25 63 - -
Vvi19g1315 922 Gene3D - 397 490 IPR036388 -
Vvi19g1315 922 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 29 835 - -
Vvi19g1315 922 Gene3D - 310 396 IPR042197 -
Vvi19g1315 922 PRINTS Disease resistance protein signature 175 190 - -
Vvi19g1315 922 PRINTS Disease resistance protein signature 345 359 - -
Vvi19g1315 922 PRINTS Disease resistance protein signature 251 265 - -
Vvi19g1315 922 PRINTS Disease resistance protein signature 547 563 - -
Vvi19g1315 922 Pfam NB-ARC domain 159 398 IPR002182 GO:0043531
Vvi19g1315 922 Gene3D Ribonuclease Inhibitor 493 854 IPR032675 -
Vvi19g1315 922 FunFam Probable disease resistance protein At1g61300 135 304 - -
Vvi19g1315 922 FunFam Probable disease resistance protein At1g63360 397 491 - -
Vvi19g1315 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 412 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1315 Vvi-Chr19 22066114 22074329 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1315 173 489 WRKY Transcription Factor Family AT5G45050 23.988 6.77e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1315 - K13459 vvi:100261532 1711.43