Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1312 ATGGATTGTGTGAGCCCCATCCTGGATGCCGCCACTCGCTTGTGGGATTGCACTGCTAAGCGTGCTGTTTACATCCGTCACCTCCCACAAAATCTCAACTCTTTGAGAACTGAAATGGAGGAACTCAAGAACCTGTACGAAGATGTGAAGGAAAGGGTGGAACGTGAAGAGAAACGTCAGAAGAAGCATCTTCGTGTAGTTGATGGCTGGCTCCGCGGAGTAGAAGCCATGGAAAAAGAAGTGCAGGAAATATTGGCGAAAGGTGATGAAGAAATCCAGAAGAAATGTCTCGGAACCTGTTGTCCTAAAAACTGTGGCGCTAGCTACAATCTTGGCAAGATGGTACTTGAAAAGATGGATGCTGTGACGGTCAAGAAGACGGAGGGCTCAAATTTCAGTGTAGTTGCTGAACCTTTGCCTAGTCCTCCCGTGATGGAGAGGCAGCTTGAAAAGACTGTGGGCCAAGATTTGTTGTTTGGGAAGGTCTGGAAATGGCTCCAAGATGGTGGAGAGCAGGTAAGCAGTATCGGATTATATGGAATGGGGGGTGTGGGCAAAACCACCCTCTTGACCAGGATCAACAATGAGCTCCTCAAAACCAGGCTTGAATTTGATGCAGTGATTTGGGTGACTGTGTCCAGACCAGCCAATGTGGAAAAGGTTCAGCGAGTTCTTTTCAATAAAGTGGAGATTCCCCAAGATAAATGGGAAGGTAGGAGTGAGGATGAAAGGGCAGAAGAAATATTCAATGTCCTGAAGACAAAGAAATTTGTGCTTTTGTTAGATGACATATGGGAGCGGCTGGATCTATCCAAAGTTGGTATTCCTCCTCTCAATCCTCAAGATAAGTTGAAGATGGTACTTACAACGCGATCTAAAGATGTGTGCCAAGATATGGAAGTTACAGAGAGCATTGAAATGAATTGTCTCCCATGGGAGGATGCTTTTGCTCTGTTTCAGACCAAGGTGGGAGCAGACACCATAAATTCTCATCCAGATATACCAAAGTTGGCGGAGATGGTTGCCAAAGAGTGTTGCGGCTTACCACTTGCCCTCATCACCATAGGGCGAGCAATGGCGGGAACAAAAACACCCGAAGAATGGGAGAAAAAAATAAAAATGTTGAAGAATTATCCGGCAAAGTTTCCAGGTATGGAGAATCGTCTGTTTTCACGCTTGGCATTCAGTTATGATAGCCTACCCGATGAAACCATCAAATTGTGTTTCCTATATTGCTCTTTATTTCCGGAGGATTATGAAATCTCTCATCGAAATCTTATACAACTTTGGATCGGGGAGGGTTTTCTGGATGAATATGACAACATACAACAAGCAAGAAATCAAGGAGAAGAAGTTATTAAAAGTTTACAGCTGGCATGTCTATTAGAGAATGGCAGATCTCCATTAGATGAAAAAGACAAATATTTGAAGATGCATGATGTTATTCGTGATATGGCTTTGTGGTTGGCTCGTGAAAACGGGAAGAAGAAGAACAAATTTGTGGTAAAAGATGGAGTTGAACCGATTAGAGCTCAGGAAGTTGAAAAATGGAAAGAGACACAGAGGATATCATTGTGGGATACCAACATTGAAGAACTTAGGAAACCACCATATTTCCCTAATATGGACACCTTTTTGGCATCACATAAGTTTATTCGGTCATTTCCAAATAGATTCTTTACAAACATGCCTATTATAAGAGTTTTGGTCTTGTCAAACAATTTTAAACTTACAGAGTTACCTGCGGAGATTGGAAACTTAGTTACTTTGCAATATCTTAATTTTTCGGGTCTAAGTATAAAATACTTACCTGCGGAGCTCAAGAATTTGAAAAAATTAAGGTGCTTGATATTGAATGAAATGTATTCGCTCAAGTCACTTCCATCTCAAATGGTATCAAGTCTTTCCTCTTTGCAATTGTTCAGCATGTATAGCACGATTGTAGGGTCAGACTTTACGGGAGATGATGAAGGAAGGTTATTAGAAGAGTTAGAGCAGCTAGAACACATTGATGATATATCTATCCACCTTACAAGTGTATCATCCATCCAAACATTACTTAACTCCCACAAGTTGCAAAGATCCACAAGATGGGTGCAATTAGGTTGTGAGCGTATGAACCTGGTCCAACTATCCCTTTATATAGAGACACTCCGTATTAGAAATTGTTTTGAATTGCAAGATGTGAAAATCAATTTTGAAAAGGAAGTGGTGGTCTACTCAAAATTCCCAAGGCACCAATGCTTGAACAACCTTTGTGATGTCGACATATCCGGATGTGGTGAATTGTTGAATTTGACATGGCTTATTTGTGCTCCAAGCCTTCAATTTCTAAGTGTTTCAGCATGTAAATCAATGGAAAAAGTGATAGATGATGAAAAGAGTGAAGTTTTAGAAATTGAAGTAGATCATGTGGGTGTATTCTCGAGACTCATATCTCTCACTTTAATATGGCTACCAAAGCTAAGAAGTATATATGGACGTGCCCTACCTTTTCCATCTTTAAGACACATCCATGTGTCTGGATGTCCAAGTTTGAGGAAGCTGCCATTTCATTCCAATACTGGAGTGAGCAAGAAATTCGAGAAAATCAAGGGAGACCAAGAATGGTGGGATGAATTGGAGTGGGAGGATCAAACCATTATGCACAACCTCACTCCATATTTTCAATCCGAGTGA 2679 0.4117 MDCVSPILDAATRLWDCTAKRAVYIRHLPQNLNSLRTEMEELKNLYEDVKERVEREEKRQKKHLRVVDGWLRGVEAMEKEVQEILAKGDEEIQKKCLGTCCPKNCGASYNLGKMVLEKMDAVTVKKTEGSNFSVVAEPLPSPPVMERQLEKTVGQDLLFGKVWKWLQDGGEQVSSIGLYGMGGVGKTTLLTRINNELLKTRLEFDAVIWVTVSRPANVEKVQRVLFNKVEIPQDKWEGRSEDERAEEIFNVLKTKKFVLLLDDIWERLDLSKVGIPPLNPQDKLKMVLTTRSKDVCQDMEVTESIEMNCLPWEDAFALFQTKVGADTINSHPDIPKLAEMVAKECCGLPLALITIGRAMAGTKTPEEWEKKIKMLKNYPAKFPGMENRLFSRLAFSYDSLPDETIKLCFLYCSLFPEDYEISHRNLIQLWIGEGFLDEYDNIQQARNQGEEVIKSLQLACLLENGRSPLDEKDKYLKMHDVIRDMALWLARENGKKKNKFVVKDGVEPIRAQEVEKWKETQRISLWDTNIEELRKPPYFPNMDTFLASHKFIRSFPNRFFTNMPIIRVLVLSNNFKLTELPAEIGNLVTLQYLNFSGLSIKYLPAELKNLKKLRCLILNEMYSLKSLPSQMVSSLSSLQLFSMYSTIVGSDFTGDDEGRLLEELEQLEHIDDISIHLTSVSSIQTLLNSHKLQRSTRWVQLGCERMNLVQLSLYIETLRIRNCFELQDVKINFEKEVVVYSKFPRHQCLNNLCDVDISGCGELLNLTWLICAPSLQFLSVSACKSMEKVIDDEKSEVLEIEVDHVGVFSRLISLTLIWLPKLRSIYGRALPFPSLRHIHVSGCPSLRKLPFHSNTGVSKKFEKIKGDQEWWDELEWEDQTIMHNLTPYFQSE* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1312 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 412 IPR027417 -
Vvi19g1312 892 Gene3D - 138 308 IPR027417 -
Vvi19g1312 892 FunFam Probable disease resistance protein At5g66910 309 396 - -
Vvi19g1312 892 Gene3D - 310 396 IPR042197 -
Vvi19g1312 892 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 29 850 - -
Vvi19g1312 892 Gene3D - 397 487 IPR036388 -
Vvi19g1312 892 FunFam Probable disease resistance protein At1g63360 397 488 - -
Vvi19g1312 892 Coils Coil 25 66 - -
Vvi19g1312 892 Gene3D Ribonuclease Inhibitor 488 865 IPR032675 -
Vvi19g1312 892 Pfam NB-ARC domain 159 398 IPR002182 GO:0043531
Vvi19g1312 892 PRINTS Disease resistance protein signature 175 190 - -
Vvi19g1312 892 PRINTS Disease resistance protein signature 747 763 - -
Vvi19g1312 892 PRINTS Disease resistance protein signature 251 265 - -
Vvi19g1312 892 PRINTS Disease resistance protein signature 345 359 - -
Vvi19g1312 892 SUPERFAMILY L domain-like 471 856 - -
Vvi19g1312 892 FunFam Probable disease resistance protein At1g61300 135 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1312 Vvi-Chr19 22053761 22056439 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1312 173 852 WRKY Transcription Factor Family AT5G45050 22.545 1.99e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1312 - K13459 vvi:100246150 1741.86