Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1311 ATGGATTTTGTGAGCCCAGTCTTGGATGTTGCCTCTCTCATCTGCAATTGCGTTGGCCATCGTGCTGTTAAAGTCCGTCGTCTCCCACAAAATCTCAACTCTTTGAGAAGTGCAATGGAGGAACTCAAGAACCTCTATGAAGATGTGAAGGAAAGGGTGGAACGTGAAGAGAGTCTTGAGAAGAAGCGTACACATGTTGTGGATAGATGGATTCAGAGAGCAGAAGCCATGGAAAAAGAAGTGAACGAATTACTGGCAAAAGGTGATGAAGAAATCCAGAAGAAATGTCTCGGAACCTGTTGTCCCAGAAACTGTCGCGCCACCTACAAGCTTGCGAAAATCGTACAGGAGAAGATGGATGCTGTGGCTGCACTACAAACCGAAGGAAATAATTTTCAAGAAGTGGCTGTCCCTTTGCGTTTTTCTCAGGTGATTGAGATGCCATTGGAGAAGCCTGTAGGCTTAGATTCACCTTTTCATGAGGTCTGGAGATTGCTCCAAGACGAACAAGTGGGGACTATTGGAATTTACGGAATGGGGGATGTGGGGAAAACCACCCTCTTGAAGAAAATCAATAACAAGTTCCTCACACCCAATAATAACTTTGATATTGTGATATGGGTTGTCATCTCCAAACCAACAAACTTGCGGAAGATCCAGGAAACACTTCTGAGTAGACTCCAGATTCCCGATGACAGATGGAAAAATAGGAGCGAGGATGAGATGGCTGCAGAAATATACAGGGTCTTGAAAACCAAGAAATTTGTGCTCTTGTTAGATGATATATGGGAGCCCTTTAATCTCTTGCAAGTGGGAATTCCTCCTTTGAGTGATCGAATTAAAAAGTCCAAGATAGTGTTCACAACACGATCTGCAGATGTGTGTGGCTACATGGAAGCACAGAAGAGCATTAAAGTGGAGTGCTTGAAAGAGGCGGAAGCCTTATCTCTGTTCCAGGCCAAGGTAGGAGACGACACTTTAAATTCTCATCCAGATATACCAAAGCTGTCCGAAATCGTTGCCAAAGAATGCAAAGGCCTGCCGCTCGCCCTCGTTGTCATAGCCCGAGCAATGGCTCGGGCAAAAACACCAGAAGAATGGGAGAGAAAAATGCAAAGGTTGAGGGAATATCCGGACAAGGTTCTAGGTATGGAGAATGATTTATTTCGAGTATTAGCGTTTAGTTATGATAGCCTACCCGATGAAGCCATCAAATCGTGTTTCCTGTATTGCTCTTTACTTCCGGAGGATTATGGAATCTCTTCTCGAGATCTTATAGGACTTTGGATCGGGGAGGGGATTTTGGATGAATGTGACAGGATCCAAGGACAAGAAATTATTGAAAGCTTAAAAGATGCATGTCGAGAATGGCACACCTCCATTCATAGAAGAAGAATATTTGAAGATGCATGA 1413 0.4395 MDFVSPVLDVASLICNCVGHRAVKVRRLPQNLNSLRSAMEELKNLYEDVKERVEREESLEKKRTHVVDRWIQRAEAMEKEVNELLAKGDEEIQKKCLGTCCPRNCRATYKLAKIVQEKMDAVAALQTEGNNFQEVAVPLRFSQVIEMPLEKPVGLDSPFHEVWRLLQDEQVGTIGIYGMGDVGKTTLLKKINNKFLTPNNNFDIVIWVVISKPTNLRKIQETLLSRLQIPDDRWKNRSEDEMAAEIYRVLKTKKFVLLLDDIWEPFNLLQVGIPPLSDRIKKSKIVFTTRSADVCGYMEAQKSIKVECLKEAEALSLFQAKVGDDTLNSHPDIPKLSEIVAKECKGLPLALVVIARAMARAKTPEEWERKMQRLREYPDKVLGMENDLFRVLAFSYDSLPDEAIKSCFLYCSLLPEDYGISSRDLIGLWIGEGILDECDRIQGQEIIESLKDACREWHTSIHRRRIFEDA* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1311 470 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 33 455 - -
Vvi19g1311 470 Gene3D - 309 395 IPR042197 -
Vvi19g1311 470 PRINTS Disease resistance protein signature 249 263 - -
Vvi19g1311 470 PRINTS Disease resistance protein signature 344 358 - -
Vvi19g1311 470 PRINTS Disease resistance protein signature 173 188 - -
Vvi19g1311 470 FunFam Probable disease resistance protein At5g66910 308 395 - -
Vvi19g1311 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 411 IPR027417 -
Vvi19g1311 470 Coils Coil 25 62 - -
Vvi19g1311 470 Pfam NB-ARC domain 161 397 IPR002182 GO:0043531
Vvi19g1311 470 FunFam Probable disease resistance protein At1g61300 135 303 - -
Vvi19g1311 470 Gene3D - 396 455 IPR036388 -
Vvi19g1311 470 Coils Coil 67 94 - -
Vvi19g1311 470 Gene3D - 137 308 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1311 Vvi-Chr19 22034763 22036175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1311 153 409 WRKY Transcription Factor Family AT5G45050 24.710 5.07e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1311 - K13459 vvi:100246240 621.313