Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1310 ATGGATTGTGTAAGACCCATCCTGGATGTCGCCACTCGCTTATGGGATAGCGCCGCTAAGCGTCCTGTTTACATCCGTCATCTCCCACAAAATCTCAACTCTTTGAGAACTGAAATGGAGGAACTCAAGAACCTGTACGAAGATGTGAAGGAAAGGGTGGAACGTGAAGAGAAACGTCAGAAGAAGCGTCTTCGTGTAGTTGATGGCTGGCTTCGCGGAGTAGAAGCCATAGAAAAAGAAGTGGAGGAAATATTGGCGAAAGGAGACGAAGAAATCCAGAAGAAATGTCTCGGAACCTGTTATCCTAAAAACTGTGGCGCTAGCTACAATCTTGGCAAGATGGTACTTGAAAAGATGGATGCTGTGACGGTCAAAAAGACGGAGGGCTCAAATTTCAGTGTAGTTGCTGAACCTTTGCCTAGTCCTCCCGTGATGGAGAGGCAGCTTGAAAAGACTGTGGGCCAAGATTTGTTGTTTGGGAAGGTCTGGAAATGGCTCCAAGATGGTGGAGAGCAGGTAAGCAGTATCGGATTATATGGAATGGGGGGTGTGGGCAAAACCACCCTCTTGACCAGGATCAACAATGAGCTCCTCAAAACCAGGCTTGAATTTGATGCAGTGATTTGGGTGACTGTGTCCAGACCAGCCAATGTGGAAAAGGTTCAGCGAGTTCTTTTCAATAAAGTGGAGATTCCCCAAGATAAATGGGAAGGTAGGAGTGAGGATGAAAGGGCAGAAGAAATATTCAATGTCCTGAAGACAAAGAAATTTGTGCTTTTGTTAGATGACATATGGGAGCGGCTGGATCTATCCAAAGTTGGTATTCCTCCTCTGAATCCTCAAGATAAGTTGAAGATGGTACTTACAACGCGATCTAAAGATGTGTGCCAAGATATGGAAGTTACAGAGAGCATTGAAATGAATTGTCTCCCATGGGAGGATGCTTTTGCTCTGTTTCAGACCAAGGTGGGAGCAGACACCATAAATTCTCATCCAGATATACCAAAGCTGGCGGAGATGGTTGCCAAAGAGTGTTGCGGCTTACCACTTGCCCTCATCACCATAGGGCGAGCAATGGCGGGAACAAAAACACCCGAAGAATGGGAGAAAAAAATACAAATGTTGAAGAATTATCCGGCAAAGTTTCCAGGTATGGAGAATCGTCTGTTTTCACGCTTGGCATTCAGTTATGATAGCCTACCCGATGAAACCATCAAATCGTGTTTCCTATATTGCTCTTTATTTCCGGAGGATTATGAAATCTCTCATCGAAATATTATACAACTTTGGATTGGGGAGGGTTTTCTGGATGAATGTGACAACATACAAAAAGCAAGAAATCAAGGCGAAGAAGTTATTAAAAGTTTACAGCTTGCATGTCTATTGGAGAATGGCATATCTCCATTAGATGAAAAAGACGAATATTTGAAGATGCATGATGTTATTCGTGATATGGCTTTGTGGTTGGCTCACGAAAATGGGAAGAAGAAGAACAAATTTGTGGTAAAAGATGGAGTCGAATCGATTAGAGCTCAGGAAGTTGAAAAATGGAAAGAGACACAGAGGATATCATTGTGGAATACCGACATTGAAGAACATAGGAAACCACCATATTTCCCTAATATTGAGACCTTTTTGGCATCAAGTGTGTTTATTGAGTCATTTTCAAATAGATTCTTTACAAACATGCCTATTATAAGAGTTTTGGACTTGTCAAACAATTTTAAACTTATGAAGTTACCTGTGGAGATTAGAAACTTAGTTACCTTGCAATATCTTAATTTGTCGTGTACAAGTATTGAATACTTACCTGTGGAGCTCAAGAACTTGAAAAAATTAAGGTGCTTGATATTGAATGATATGTATTTTCTTGAGTCACTTCCATCTCAAATGGTATCGAGTCTTTCCTCTTTGCAATTGTTTAGTATGTATAGCACGGAAGGGTCAGCCTTTAAGGGATATGATGAAAGAAGGTTATTAGAAGAGTTAGAGCAGTTGGAACACATTGATGATATATCCATCGACCTTACAAGTGTATCATCCATCCAAACATTATTTAACTCCCACAAGTTGCAAAGATCCACAAGATGGCTACAATTAGTTTGTGAGCGTATGAACCTGGTCCAACTATCCCTTTATATAGAGACCCTCCATATTAAAAATTGTTTTGAATTGCAAGATGTGAAAATCAATTTTGAAAATGAAGTGGTGGTCTACTCAAAATTCCCAAGGCACCCATGCTTGAACAACCTTTGTGATGTCAAAATATTTCGATGTCATAAATTGTTGAATTTGACATGGCTTATTTGTGCTCCAAGCCTTCAATTTCTAAGTGTTGAATTCTGTGAATCAATGGAAAAAGTGATAGATGATGAAAGAAGTGAAGTTTTAGAAATTGAGGTAGATCATTTGGGTGTTTTCTCGAGACTCATATCACTCACTTTAACATGGCTACCAAAGCTAAGAAGTATATATGGACGTGCCCTACCTTTTCCATCTTTAAGATACATCCGTGTGCTTCAATGTCCAAGTTTGAGGAAGCTGCCATTTGATTCCAACACTGGAATAAGCAAGAAATTAGAGCAAATCCGTGGACAAAAAGAATGGTGGGATGGTTTGGATTGGGAGGATCAAGTGATTATGCACAACCTCACTCCATATTTTCAACCCACACAAATTCAAGACGAGATTTGA 2694 0.4031 MDCVRPILDVATRLWDSAAKRPVYIRHLPQNLNSLRTEMEELKNLYEDVKERVEREEKRQKKRLRVVDGWLRGVEAIEKEVEEILAKGDEEIQKKCLGTCYPKNCGASYNLGKMVLEKMDAVTVKKTEGSNFSVVAEPLPSPPVMERQLEKTVGQDLLFGKVWKWLQDGGEQVSSIGLYGMGGVGKTTLLTRINNELLKTRLEFDAVIWVTVSRPANVEKVQRVLFNKVEIPQDKWEGRSEDERAEEIFNVLKTKKFVLLLDDIWERLDLSKVGIPPLNPQDKLKMVLTTRSKDVCQDMEVTESIEMNCLPWEDAFALFQTKVGADTINSHPDIPKLAEMVAKECCGLPLALITIGRAMAGTKTPEEWEKKIQMLKNYPAKFPGMENRLFSRLAFSYDSLPDETIKSCFLYCSLFPEDYEISHRNIIQLWIGEGFLDECDNIQKARNQGEEVIKSLQLACLLENGISPLDEKDEYLKMHDVIRDMALWLAHENGKKKNKFVVKDGVESIRAQEVEKWKETQRISLWNTDIEEHRKPPYFPNIETFLASSVFIESFSNRFFTNMPIIRVLDLSNNFKLMKLPVEIRNLVTLQYLNLSCTSIEYLPVELKNLKKLRCLILNDMYFLESLPSQMVSSLSSLQLFSMYSTEGSAFKGYDERRLLEELEQLEHIDDISIDLTSVSSIQTLFNSHKLQRSTRWLQLVCERMNLVQLSLYIETLHIKNCFELQDVKINFENEVVVYSKFPRHPCLNNLCDVKIFRCHKLLNLTWLICAPSLQFLSVEFCESMEKVIDDERSEVLEIEVDHLGVFSRLISLTLTWLPKLRSIYGRALPFPSLRYIRVLQCPSLRKLPFDSNTGISKKLEQIRGQKEWWDGLDWEDQVIMHNLTPYFQPTQIQDEI* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1310 897 Gene3D - 310 396 IPR042197 -
Vvi19g1310 897 PRINTS Disease resistance protein signature 251 265 - -
Vvi19g1310 897 PRINTS Disease resistance protein signature 175 190 - -
Vvi19g1310 897 PRINTS Disease resistance protein signature 345 359 - -
Vvi19g1310 897 PRINTS Disease resistance protein signature 561 577 - -
Vvi19g1310 897 Gene3D - 138 308 IPR027417 -
Vvi19g1310 897 Coils Coil 25 63 - -
Vvi19g1310 897 FunFam Probable disease resistance protein At5g66910 309 396 - -
Vvi19g1310 897 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 29 849 - -
Vvi19g1310 897 Gene3D - 397 487 IPR036388 -
Vvi19g1310 897 SUPERFAMILY L domain-like 468 862 - -
Vvi19g1310 897 FunFam Probable disease resistance protein At1g61300 135 304 - -
Vvi19g1310 897 Gene3D Ribonuclease Inhibitor 505 867 IPR032675 -
Vvi19g1310 897 FunFam Probable disease resistance protein At1g63360 397 488 - -
Vvi19g1310 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 412 IPR027417 -
Vvi19g1310 897 Pfam NB-ARC domain 159 398 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1310 Vvi-Chr19 22021695 22024388 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1310 173 486 WRKY Transcription Factor Family AT5G45050 24.051 7.34e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1310 - K13459 vvi:100263309 1757.27