Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1309 ATGGATTGTGTGAGCCCAATCCTGGATGTCACTACTCGCTTGTGGTATTGCACTGCCAAGCGTGCTGTTTACATCCGTCATCTCCCACAAAATCTCAACTCTTTGAGAACTGCAATGGAGGAACTCAAGAACCTATACGAAGATGTGAAGGAACGGGTGGAACGTGAAGAGAAACTTCAGAAGAAGTGTACTCATGTAGTCGATGGCTGGCTCCGCAATGTAGAAGCCATGGAAGAACAAGTGAAGGAAATATTGGCGAAAGGTGATGAAGAAATCCAGAAGAAATATCTCGGAACCTGTTGTCCTAAAAACTGTGGCGCTAGCTACAATCTTGGCAAGATGGTACTTGAAAAGATGGATGCTGTGACGGTAAAGAAGACGGAGGGCTCAAATTTCAGTGTAGTTGCTGAACCTTTGCCTAGTCCTCCCGTGATGGAGAGGCAGCTTGACAAGACTGTGGGCCAAGATTTGTTGTTTGGGAAGGTCTGGAAATGGCTCCAAGATGGTGGAGAGCAGGTAAGCAGTATCGGATTATATGGAATGGGGGGTGTGGGCAAAACCACCCTCTTGACCAGGATCAACAATGAGCTCCTCAAAACCAGGCTTGAATTTGATGCAGTGATTTGGGTGACTGTGTCCAGACCAGCCAATGTGGAAAAGGTTCAGCGAGTTCTTTTCAATAAAGTGGAGATTCCCCAAGATAAATGGGAAGGTAGAAGTGAGGATGAAAGGGCAGAAGAAATATTCAATGTCCTGAAGACAAAGAAATTTGTGCTTTTGTTAGATGACATATGGGAGCGGCTGGATCTATCCAAAGTTGGTATTCCTCCTCTGAATCCTCAAGATAAGTTGAAGATGGTACTTACAACGCGATCTAAAGATGTGTGCCAAGATATGGAAGTTACAGAGAGCATTGAAGTGAATTGTCTCCCATGGGAGGATGCTTTTGCTCTGTTTCAGACCAAGGTGGGAGCAGACACCATAAATTCTCATCCAGATATACCAAAGCTGGCGGAGATGGTTGCCAAAGAGTGTTGCGGCTTACCACTTGCCCTCATCACCATAGGGCGAGCAATGGCGGGAACAAAAACACCAGAAGAATGGGAGAAAAAAATACAAATGTTGAAGAATTATCCGGCAAAGTTTCCAGGTATGGAGAATCATTTGTTTTCACGCTTGGCATTCAGTTATGATCGCCTACCCGATGAAGCCATCAAATCATGTTTCCTATATTGCTCTTTATTTCCGGAGGATTATGAAATCTCTCATCGAAATCTTATACAACTTTGGATCGGGGAGGGTTTTCTGGATGAATATGACAACATACAAGAAGCAAGATATCAAGGAGAAGAAGTTATTAAAAGTTTACAACTTGCATGTCTATTAGAGAATGGCAGATCTCGATTAGATAAAAAAGACGAATATTCGAAGATGCATGATGTTATTCGTGATATGGCTTTGTGGTTGGCTCGCGAAAACGGGAAGAAGAAGAACAAATTTGTGGTAAAAGATGGAGTTGAATCGATTAGAGCTCAGGAAGTTGAAAAATGGAAAGAGACACAGAGGATATCATTGTGGGATACCAACATTGAAGAACTTGGGGAACCACCATATTTCCCTAATATGGAGACCTTTTTGGCATCTCGTGCTCTGTTTGAGATTTGGTTGATTTCATAA 1677 0.4299 MDCVSPILDVTTRLWYCTAKRAVYIRHLPQNLNSLRTAMEELKNLYEDVKERVEREEKLQKKCTHVVDGWLRNVEAMEEQVKEILAKGDEEIQKKYLGTCCPKNCGASYNLGKMVLEKMDAVTVKKTEGSNFSVVAEPLPSPPVMERQLDKTVGQDLLFGKVWKWLQDGGEQVSSIGLYGMGGVGKTTLLTRINNELLKTRLEFDAVIWVTVSRPANVEKVQRVLFNKVEIPQDKWEGRSEDERAEEIFNVLKTKKFVLLLDDIWERLDLSKVGIPPLNPQDKLKMVLTTRSKDVCQDMEVTESIEVNCLPWEDAFALFQTKVGADTINSHPDIPKLAEMVAKECCGLPLALITIGRAMAGTKTPEEWEKKIQMLKNYPAKFPGMENHLFSRLAFSYDRLPDEAIKSCFLYCSLFPEDYEISHRNLIQLWIGEGFLDEYDNIQEARYQGEEVIKSLQLACLLENGRSRLDKKDEYSKMHDVIRDMALWLARENGKKKNKFVVKDGVESIRAQEVEKWKETQRISLWDTNIEELGEPPYFPNMETFLASRALFEIWLIS* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1309 558 Coils Coil 67 87 - -
Vvi19g1309 558 Gene3D - 138 308 IPR027417 -
Vvi19g1309 558 FunFam Probable disease resistance protein At1g63360 397 488 - -
Vvi19g1309 558 FunFam Probable disease resistance protein At1g61300 136 304 - -
Vvi19g1309 558 FunFam Probable disease resistance protein At5g66910 309 396 - -
Vvi19g1309 558 Gene3D - 397 487 IPR036388 -
Vvi19g1309 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 412 IPR027417 -
Vvi19g1309 558 Coils Coil 32 62 - -
Vvi19g1309 558 PRINTS Disease resistance protein signature 345 359 - -
Vvi19g1309 558 PRINTS Disease resistance protein signature 175 190 - -
Vvi19g1309 558 PRINTS Disease resistance protein signature 251 265 - -
Vvi19g1309 558 Pfam NB-ARC domain 159 398 IPR002182 GO:0043531
Vvi19g1309 558 Gene3D - 310 396 IPR042197 -
Vvi19g1309 558 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 29 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1309 Vvi-Chr19 22004913 22008384 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1309 173 486 WRKY Transcription Factor Family AT5G45050 24.367 2.23e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1309 - K13459 vvi:104877773 1106.66