Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1306 ATGGATTGTGTGAGCCCAATCCTGGATGTCGCTACTCGCTTGTGGGATTGCACTGCCAAGCGTGCTGTTTACATCCGTCATCTCCCACAAAATCTCAACTCTTTGAGAACTGCAATGGGGGAACTCAAGAACCTATACAAAGATGTGAAGGAAAGGGTGGAACGTGAAGAGAAACTTCAGAAGAAGCGTACTCATGTAGTCGATGGCTGGCTCCGCAATGTAGAAGCCATGGAAGAACAAGTGAAGGAAATATTGGCCAAAGGTGATGAAGAAATCCAGAAGAAATGTCTCGGAACCTGTTGTCCTAAAAACTGTGGCGCTAGCTACAAGCTTGGCAAGATGGTACTTGAAAAGATGGATGCTGTGACGGTAAAGAAGACGGAGGGCTCAAATTTCAGTGTAGTTGCTGAACCTTTCCCTAGTCCTCCCGTGATCGAGAGGCCTCTGGACAAGACTGTGGGCCAAGATTTGTTGTTTGGGAAGGTCTGGAAATGGCTCCAAGATGATGGAGAGCAGGTAAGCAGTATCGGATTATATGGAATGGGGGGTGTGGGCAAAACCACCCTCTTGACCAGGATCAACAATGAGCTCCTCAAAACCAGGCTTGAATTTGATGCAGTGATTTGGGTGACTGTGTCCAGACCAGCCAATGTGGAAAAAGTTCAGCAAGTTCTTTTCAATAAATTGGAGATTGGGAAAGATAAATGGGAAGATAGGAGTGAGGATGAAAGGGCAGAAGAAATATTCAATGTCCTGAAGACAAAGAAATTTGTGCTTTTGTTAGATGACATATGGGAGCGGCTGGATCTATCCAAAGTTGGTATTCCTCCTCTGAATCATCAAGATAAGTTGAAGATGGTATTTACAACGCGATCTAAACAAGTGTGCCAAAAGATGGAATCTACCAAGAGCATTGAAGTGAATTGCCTCCCATGGGAGGAAGCTTTTGCTCTGTTTCAGACCAAGGTAGGAGCAGACACCATAAGTTCTCATCCAGATATACCAAAGCTGGCGGAGATGGTTGCCAAAGAGTGTGACGGCTTACCACTTGCCCTCATCACCACAGGGCGAGCAATGGCGGGAGCAAAAGCACCCGAGGAATGGGAGAAAAAAATAGAAATGTTGAAGAATTCTCCTGCAAAGTTTCCAGGTACGGAGGAGGATTTGTTTCGAGTATTAGCAATCAGTTATGATAGCCTACCCGATGAAGCCAAAAAATCGTGTTTCCTATATTGCTCTTTATTTCCGGAGGATTATGAAATCTCTCAACGAAATCTTATACAACTTTGGATCGGGGAGGGTTTTCTGGATGAATATGACAACTTACAAGAAGCAAGAAATCAAGGAGAAGAAGTTATTAAAAGTTTACAGCTTGCATGTCTATTGGAGAATGGCAGATCTCGATTTTACGTAAAAGAAAAATATTTGAAGATGCATGATGTTATTCGTGAGATGGCTTTGTGGTTGGCCCGCAAAAACGGGAAGAAGAAGAACAAATTTGTGGTAAAAGATGGAGTTGAATCGATCAGAGCTCAGAAGTTGAAAAATGGAAAGAGACACAGAGGATATCATTGTGGAATACCAACATTGAAGAACTTAGGGAACCACCATATTTCCCTATTATGGAGACCTTTTTGA 1638 0.4328 MDCVSPILDVATRLWDCTAKRAVYIRHLPQNLNSLRTAMGELKNLYKDVKERVEREEKLQKKRTHVVDGWLRNVEAMEEQVKEILAKGDEEIQKKCLGTCCPKNCGASYKLGKMVLEKMDAVTVKKTEGSNFSVVAEPFPSPPVIERPLDKTVGQDLLFGKVWKWLQDDGEQVSSIGLYGMGGVGKTTLLTRINNELLKTRLEFDAVIWVTVSRPANVEKVQQVLFNKLEIGKDKWEDRSEDERAEEIFNVLKTKKFVLLLDDIWERLDLSKVGIPPLNHQDKLKMVFTTRSKQVCQKMESTKSIEVNCLPWEEAFALFQTKVGADTISSHPDIPKLAEMVAKECDGLPLALITTGRAMAGAKAPEEWEKKIEMLKNSPAKFPGTEEDLFRVLAISYDSLPDEAKKSCFLYCSLFPEDYEISQRNLIQLWIGEGFLDEYDNLQEARNQGEEVIKSLQLACLLENGRSRFYVKEKYLKMHDVIREMALWLARKNGKKKNKFVVKDGVESIRAQKLKNGKRHRGYHCGIPTLKNLGNHHISLLWRPF* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1306 545 Coils Coil 439 459 - -
Vvi19g1306 545 Coils Coil 32 59 - -
Vvi19g1306 545 FunFam Probable disease resistance protein At1g63360 397 488 - -
Vvi19g1306 545 Gene3D - 139 309 IPR027417 -
Vvi19g1306 545 FunFam Probable disease resistance protein At5g66910 309 396 - -
Vvi19g1306 545 FunFam Probable disease resistance protein At1g61300 137 304 - -
Vvi19g1306 545 Gene3D - 310 396 IPR042197 -
Vvi19g1306 545 Coils Coil 67 87 - -
Vvi19g1306 545 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 33 496 - -
Vvi19g1306 545 Pfam NB-ARC domain 159 398 IPR002182 GO:0043531
Vvi19g1306 545 PRINTS Disease resistance protein signature 251 265 - -
Vvi19g1306 545 PRINTS Disease resistance protein signature 175 190 - -
Vvi19g1306 545 PRINTS Disease resistance protein signature 345 359 - -
Vvi19g1306 545 Gene3D - 397 487 IPR036388 -
Vvi19g1306 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 412 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1306 Vvi-Chr19 21966252 21967889 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1306 173 499 WRKY Transcription Factor Family AT5G45050 23.565 8.82e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1306 - K13459 vvi:100249639 1013.45