LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi19g1297	ATGGATTGTGTGACTCCAATCTTGGATGTTGCCACTCGCTTATGGACTTGCACTGCCAAGCGTATTGTTTACATCCGCCGTCTCCCCCGAAATCTCAAAATCTTGAGAACTGCAATGGAGGAACTCGGGAGCGTTTATGAAGATGTGATTGAAAGGGTGGAAAGTGAAGAGAAACTTCAGAAGAAGCGTACTCGTGCAGTGGAAGGCTGGATCCGCAGTGTAGAAGCCATGGAAAAAGAAATTAAGGAAATATTGGAAGAAGGTGATGAAGAAGTCCAGAATAAATGTCTCGGAACCTGTTGTCCCAGAGACTCTTACGCCAGTTACAAGCTTGGGAAGAGGGTATCTAGAAAGATTCGGGCTGTGGCTGCACTACGAAGCAAAGCAAATCATTTCCACGAGGTAGCTGTCCCTTTGCCTAGTCCTCCGGTGATTGAGAGGCCTTCGGAAAAGACAGTAGGCTTAGATTCACCTTTTCTTGAGGTCTGGAGATGGCTCCAAGATGAACAAGTCAGAACCATTGGAATATACGGAATGGGGGGTGTGGGGAAAACTGCTCTCTTGAAGAAAATCAACAACAAGTTCCTTCAACCTAGCCATGATTTTGATGTTGTGATCTGGGTTGTCGTCTCCAAACCAACAAACTTGCAAAGGGTCCATGAAACACTTCGGAACAAATTGGAGATTCCAGATGGTAGATGGAAAAATAGGAGCGAGGATGAAAAGGCTGCAGAAATATTCGCTGTCCTGAAAACCAAGAAATTTGTGCTCTTGTTAGATGATATATGGGAGCCCCTTGATCTCTTGAAAGTGGGAATTCCCCTTTCGACTGTTGGGAATAAGTCCAAAATAGTATTCACAACAAGATCTGCAGATGTGTGTCGTGATATGGAAGCTCAGAATAGCATTAAAGTGGAGTGCTTGGCTTGGGAGGAAGCCCTTACTTTGTTTTGGGCCAAGGTAGGAGAAGACGCTTTAAATTCTCATCCAGATATACCAAAGCTATCGGAAATTGTTGTCGGGGAGTGCAAAGGCCTGCCGCTTGCTCTCATTATCATCGGTCGGGCAATGGCAGGGGCAAGAACACCTGAAGACTGGGAGAAAAAAATAAAAATGTTGAAGAATTATCCGGCAAAGTTTCCAGGTATGGGGGATAGTTTGTTTCCAGTTTTGGCATTCAGTTACGATAGCCTACCTGATGAAGCTGTCAAATCTTGTTTCCTGTATTGCTCTTTATTTCCGGAGGATTATGAAATTTCTCCTCAACATCTTATCGAACTTTGGCTCGGGGAGGGGTTTCTGGATGAATATGACGGCATACGAGAAGCAAGAAATCAAGGAGAAGAAATTATCGAAAGGTTAAAGGACGTGTGTCTATTGGAAAATGGCAGATCCCAAAAACAAGAATATTTGAAGATGCATGATGTTATTCGCGATATGGCGCTATGGTTAGCATCTGAGAATGGGAAGAAGAAGAACAAATTTGTGGTAAAAGACCAAGTTGGATTGATTAGAGCACATGAAGTTGAGAAATGGAATGAGACACAGAGGATATCATTATGGGAAAGTAGAATTGAAGAACTTAGGGAACCGCCATGTTTCCCCAATATTGAGACCTTCTCTGCATCAGGTAAGTGCATCAAGTCGTTTCCAAGTGGTTTCTTTGCATACATGCCTATCATAAGAGTTTTGGACTTGTCAAACAATTATGAACTTATTGAATTACCTGTGGAGATCGGCAACTTAGTTAATTTGCAATACCTTAATTTGTCAAGAACAAGTATAGAAAACATACCAGTGGAGCTCAAAAATTTGAAAAATCTCAAGTACTTGATATTGGATAATATGAATTCACTTCAACCACTCCCATCACAAATGCTATCAGTCCTTTCCTCTCTGCAATTGTTCAGTATGTTCAACTCACCCTATAAGGGAGATCATAGAACCCTTTTAGAGGATTTAGAGCAGTTGGAATACATCAATGATATATCCATTGACCTTACAACTGTCTTCTCCGCCCAAGCCTTATTCAACTCCCACAAGTTGCAAAGCTCCACAAGACGGCTACGATTATTTAACTGCAAGAATCTGAACTTGGTCCAACTATCCCCTTACATAGAGATGCTTCATATATCCTTCTGTCACGCATTTAAAGATGTGCAAATCAGTTTGGAAAAGGAGGTGCTGCATTCAAAATTCCCAAGGCACGGGCATTGCTTGTACCACCTTTGCCATGTAAATATATCTTGGTGTAGTAAATTGTTGAACTTGACCTGGCTTATTTATGCTCCAAACCTTAAGTTTCTATCGATTGATGACTGTGGGTCATTGGAAGAAGTGGTTGAAATCGAAAAGAGCGAAGTTTCAGAACTTGAACTGAATTTCGACCTTTTTTCAAGACTGGTATCTCTCACTTTGATTAATCTACCAAAACTAAGGAGTATATGTAGATGGCGGCAGTCCTTTCCTTCCTTGAGAGAAATCACTGTGCTTGGGTGTCCAAGAATAAGGAAGCTGCCATTTGATTCCGACACCGGAACTAGTAAGAATTTAGAGAAAATCATTGGAGAACAAGAATGGTGGGATGGCTTGGAGTGGGAGGACAAAACCATTATGCACAGTCTCACTCCATATTTTCGAACAACGCAAAGCTCAAAAAGACTAGAGTTCCCATTCATCCCATTACAGGACAGGCATATTTCAAGATTCCCAAGATGTATTTCAAGATTCTTACAAGCTCCTTTTGGCCACATGGATGTTTGA	2763	0.4177	MDCVTPILDVATRLWTCTAKRIVYIRRLPRNLKILRTAMEELGSVYEDVIERVESEEKLQKKRTRAVEGWIRSVEAMEKEIKEILEEGDEEVQNKCLGTCCPRDSYASYKLGKRVSRKIRAVAALRSKANHFHEVAVPLPSPPVIERPSEKTVGLDSPFLEVWRWLQDEQVRTIGIYGMGGVGKTALLKKINNKFLQPSHDFDVVIWVVVSKPTNLQRVHETLRNKLEIPDGRWKNRSEDEKAAEIFAVLKTKKFVLLLDDIWEPLDLLKVGIPLSTVGNKSKIVFTTRSADVCRDMEAQNSIKVECLAWEEALTLFWAKVGEDALNSHPDIPKLSEIVVGECKGLPLALIIIGRAMAGARTPEDWEKKIKMLKNYPAKFPGMGDSLFPVLAFSYDSLPDEAVKSCFLYCSLFPEDYEISPQHLIELWLGEGFLDEYDGIREARNQGEEIIERLKDVCLLENGRSQKQEYLKMHDVIRDMALWLASENGKKKNKFVVKDQVGLIRAHEVEKWNETQRISLWESRIEELREPPCFPNIETFSASGKCIKSFPSGFFAYMPIIRVLDLSNNYELIELPVEIGNLVNLQYLNLSRTSIENIPVELKNLKNLKYLILDNMNSLQPLPSQMLSVLSSLQLFSMFNSPYKGDHRTLLEDLEQLEYINDISIDLTTVFSAQALFNSHKLQSSTRRLRLFNCKNLNLVQLSPYIEMLHISFCHAFKDVQISLEKEVLHSKFPRHGHCLYHLCHVNISWCSKLLNLTWLIYAPNLKFLSIDDCGSLEEVVEIEKSEVSELELNFDLFSRLVSLTLINLPKLRSICRWRQSFPSLREITVLGCPRIRKLPFDSDTGTSKNLEKIIGEQEWWDGLEWEDKTIMHSLTPYFRTTQSSKRLEFPFIPLQDRHISRFPRCISRFLQAPFGHMDV*	921

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi19g1297	920	FunFam	Probable disease resistance protein At1g61300	138	302	-	-
	Vvi19g1297	920	Gene3D	-	395	482	IPR036388	-
	Vvi19g1297	920	Gene3D	Ribonuclease Inhibitor	732	854	IPR032675	-
	Vvi19g1297	920	Gene3D	-	134	307	IPR027417	-
	Vvi19g1297	920	PRINTS	Disease resistance protein signature	603	619	-	-
	Vvi19g1297	920	PRINTS	Disease resistance protein signature	249	263	-	-
	Vvi19g1297	920	PRINTS	Disease resistance protein signature	343	357	-	-
	Vvi19g1297	920	PRINTS	Disease resistance protein signature	173	188	-	-
	Vvi19g1297	920	SUPERFAMILY	L domain-like	468	855	-	-
	Vvi19g1297	920	Gene3D	-	308	394	IPR042197	-
	Vvi19g1297	920	Coils	Coil	67	94	-	-
	Vvi19g1297	920	PANTHER	NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED	34	840	-	-
	Vvi19g1297	920	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	134	410	IPR027417	-
	Vvi19g1297	920	Pfam	NB-ARC domain	161	396	IPR002182	GO:0043531
	Vvi19g1297	920	Gene3D	Ribonuclease Inhibitor	509	731	IPR032675	-
	Vvi19g1297	920	ProSiteProfiles	Leucine-rich repeat profile.	584	606	IPR001611	GO:0005515
	Vvi19g1297	920	FunFam	Probable disease resistance protein At1g63360	395	483	-	-
	Vvi19g1297	920	FunFam	Probable disease resistance protein At5g66910	307	394	-	-
	Vvi19g1297	920	Pfam	Leucine rich repeat	547	595	IPR001611	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi19g1297	Vvi-Chr19	21872655	21876155	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi19g1297	153	481	WRKY Transcription Factor Family	AT5G45050	24.699	5.99e-14	74.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi19g1297	-		K13459	vvi:100246240	1806.96