Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1294 ATGGATGTCGCGGCGGATTGCGCTGCAAAGGGTGCTGCTCACTCTCGTGATCAGCTCCCACAAAATCTCGATTCTTTGGCAAACGTAATGGAGGAACTCAAGCATGTCTATCAAGATGTGAAAGAAAGGGTGAAGCGTGAAGAGCAATTTCAGAACAAGCGTACTCGTGAAGTGGATGCCTGGCTCTGCAGTGTGGAAAACATGGAAAGGGAAGTGAACGAGTTAATGGTAAAAAGCGATATAGAAATCCAGAAGAAATGTCTCGGATCCTGCTGTCTCACAAACTGCCGTTCCAGTTACAAGCTTGGGAAAATGATTAGAGAAAAGGTGGCTGCTGTGGCGGAACTACAGAGCAGAGCAGATAATTTGGACGAGGTGCCTGTCCCGTTTATTCGTCCAGCGGTGAATGAGATGCCTATGGAAAAGTCTGTGGGCTTAGATTTGTTGTTTGACAGGGTTTGGAGATGGCTCGAAGATGAACAAGTGGGAACTATCGGAATATATGGCGTAGGGGGTGTGGGGAAAACGACTCTCTTGGCAAAAATCAACAACGGGGTCTTGAAAAGGAACAATGAATTTGATGTAGTAATTTGGATTACTGTGTCCAAAGGAGAAACGATCGAGAGGGTTCAGGAACAGATTCTGAATAGATTGGATGTTCCTGATTACAAATGGAAAGATAGGAGCCAGGATGAAAAGGCTTTGGAAATATTTCAAGTTTTGAAAACAAGAAAATTTCTGCTCTTTTTAAATGATATATGGGAGCGGCTTGACCTCATGGAAGTGGGGATTCCTCCTCTAAATAATCAAAATAAGTCCAAACTAGTACTTACGACGCGCTCTCAACAGGTTTGCCACCAAATGGAAGTTCAGAAGATGGTTGAAGTAAAGTGCTTGGGAGAGGAGGAAGCCTTTGCTCTGTTTCAGGCCAACGTAGGAGAAGATACTTTAAATTCCCATCCACAGATACCAAATCTTGCTAGAATTATTGCCCAAGAGTGCCACGGTTTGCCTCTTGCCCTCGTTACCATAGGACGAGCATTGGCCGGAAGTACAGCTCCAGAAGAATGGAAGATGAAAGCACAAATGTTCAAGAATCAGTCATATGAGTCTCAACGTCTATACTCAGTTTTAGAATGGAGTTATGATAAGTTGCCTAGTGATACCATCAAATCATGTTTCATCTATTGCTCTTTATTCCCCGAGGATCATGAAATTTGTTGTGATCAGCTGATAGAACTTTGGATTGGGGAGGGATTCTTGGATGAATTTGATCATATACATGAAGCAAGAAACCAAGGAGGTATCATCATTGAGCATTTACAGCATGCAAATCTATTGCAGAATGGTATATCTGAGAAATATGTGACAATGCACGACCTAATTCGTGATTTCTCCTTGTGGATAGCTGGTGAGAGCGGGAGGAAGAAGAAATTTGTGGTACAAGAAGAGGTTGAATCCATTGAAGCTGACAAAGTGGCAACATGGAAGGAGGCACAGAGGATATCATTGTGGGACTGTAATGTGGAAGAGCTGAAAGAGTCACCATCTTTCCTCAATCTTGAGACATTGATGGTATCGTGTAAGTTCATATCATGCCCAAGTGGACTCTTTGGGTATATGCCTCTCATAAGAGTTTTGGACTTGTCCAAAAATTTTGGATTGATTGAGTTACCAGTGGAGATTGATAGGTTAGCAAGCTTGCAGTATCTTAATTTGTCCTACACACAGATAGTAAAGCTGCCAATCCAGCTCGAGAAACTGTCAAAACTAAGGTGTTTGATATTGGATGAGATGCATCTGCTTCGAATAATTCCTCGTCAACTGATATCAAAGCTTTCATCGTTGCAGCTGTTTAGTATTTTCAATTCCATGGTTGCCCATGGAGATTGTAAAGCCCTATTGAAGGAGTTAGAGTGTTTGGAGCATTTGAATGAGATCTCCATCCGTCTAAAACGTGCTCTCCCCACCCAAACATTATTCAATTCCCACAAGTTGAGAAGGAGCATAAGACGGCTAAGCCTGCAAGACTGTGCCGGCATGAGCTTTGTCCAACTGTCCCCTCATCTACAGATGCTTGAAATCTATGCATGTTCTGAACTGAGGTTTGTGAAAATCTCTGCAGAAAAGGAAGGCCCATCTGATATGGTCCATCCAAATTTCCCAAGCCACCAATATTTCTGCAAGCTTCGTGAAGTAGAGATAGTTTTTTGTCCAAGATTGTTGAACTTGACATGGCTTGCTCACGCTCAAAACCTTCTGTCCCTGGTTGTTAGAAACTGTGAGTCTCTGGAAGAAGTGATAGGAGAAGGTGGTGGAGTGGCAGAAATTGAACAAGATTTGGTGGTCGTATTCTCAGGACTCAAAACTCTCCATTTGTGGAGTCTACCAAAGCTAAAGAGTATATATGGAAGACCCCTGCCATTTCCTTCCTTGAGGGAGTTTAATGTGAGATTCTGTCCAAGTCTTAGGAAGCTGCCTTTTGATTCTGATACCTGGGCTAGTAAAAATCCATTGAAAATCAAGGGAGAAGAAGAATGGTGGGATGGACTCGAGTGGGAGGATCAAAACAGTGCTAAGCTCTCTCTCTCTCCATGTTTCGTGCCTGTGAGGTGGTGA 2619 0.4299 MDVAADCAAKGAAHSRDQLPQNLDSLANVMEELKHVYQDVKERVKREEQFQNKRTREVDAWLCSVENMEREVNELMVKSDIEIQKKCLGSCCLTNCRSSYKLGKMIREKVAAVAELQSRADNLDEVPVPFIRPAVNEMPMEKSVGLDLLFDRVWRWLEDEQVGTIGIYGVGGVGKTTLLAKINNGVLKRNNEFDVVIWITVSKGETIERVQEQILNRLDVPDYKWKDRSQDEKALEIFQVLKTRKFLLFLNDIWERLDLMEVGIPPLNNQNKSKLVLTTRSQQVCHQMEVQKMVEVKCLGEEEAFALFQANVGEDTLNSHPQIPNLARIIAQECHGLPLALVTIGRALAGSTAPEEWKMKAQMFKNQSYESQRLYSVLEWSYDKLPSDTIKSCFIYCSLFPEDHEICCDQLIELWIGEGFLDEFDHIHEARNQGGIIIEHLQHANLLQNGISEKYVTMHDLIRDFSLWIAGESGRKKKFVVQEEVESIEADKVATWKEAQRISLWDCNVEELKESPSFLNLETLMVSCKFISCPSGLFGYMPLIRVLDLSKNFGLIELPVEIDRLASLQYLNLSYTQIVKLPIQLEKLSKLRCLILDEMHLLRIIPRQLISKLSSLQLFSIFNSMVAHGDCKALLKELECLEHLNEISIRLKRALPTQTLFNSHKLRRSIRRLSLQDCAGMSFVQLSPHLQMLEIYACSELRFVKISAEKEGPSDMVHPNFPSHQYFCKLREVEIVFCPRLLNLTWLAHAQNLLSLVVRNCESLEEVIGEGGGVAEIEQDLVVVFSGLKTLHLWSLPKLKSIYGRPLPFPSLREFNVRFCPSLRKLPFDSDTWASKNPLKIKGEEEWWDGLEWEDQNSAKLSLSPCFVPVRW* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1294 872 Gene3D Ribonuclease Inhibitor 722 838 IPR032675 -
Vvi19g1294 872 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 397 IPR027417 -
Vvi19g1294 872 Gene3D - 382 467 IPR036388 -
Vvi19g1294 872 FunFam Probable disease resistance protein At1g61300 130 293 - -
Vvi19g1294 872 Pfam NB-ARC domain 150 383 IPR002182 GO:0043531
Vvi19g1294 872 Coils Coil 23 50 - -
Vvi19g1294 872 Gene3D - 131 297 IPR027417 -
Vvi19g1294 872 PRINTS Disease resistance protein signature 240 254 - -
Vvi19g1294 872 PRINTS Disease resistance protein signature 164 179 - -
Vvi19g1294 872 PRINTS Disease resistance protein signature 334 348 - -
Vvi19g1294 872 PRINTS Disease resistance protein signature 539 555 - -
Vvi19g1294 872 FunFam Probable disease resistance protein At1g63360 382 468 - -
Vvi19g1294 872 Gene3D Ribonuclease Inhibitor 475 714 IPR032675 -
Vvi19g1294 872 Coils Coil 106 126 - -
Vvi19g1294 872 Gene3D - 298 381 IPR042197 -
Vvi19g1294 872 SUPERFAMILY L domain-like 454 833 - -
Vvi19g1294 872 FunFam Probable disease resistance protein At5g66910 298 381 - -
Vvi19g1294 872 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 25 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1294 Vvi-Chr19 21811437 21814055 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1294 517 720 Miscellaneous Gene Families AT4G39270 30.769 1.99e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1294 - K13459 vvi:100242696 1612.82