Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1293 ATGGACTTTGTGAGTCCAATCCTGGAAATCGTCAACCGCTTATGGGATTGCTGTGATAAGCGTGCTGTTTTCATCCGTCAACTCCCAGAAAATCTCAAGTCTTTGAGAGATGAAATGGAGGAACTTAAGAATGTGTATAGAGATGTGAAGAAAAGGGTGGAAGATGAACAGAAACTTCAGAAGGAGATTAAACATGTGGTGACTGGCTGGATCCGCAGCGTAGAATCCATGGAAGGAGAAGTGAACGAAATGTTGACAAAAGGAGAAGAAGAAATCAAGAAGAAATGTCTCGGAACCTGTTGCACCTGTTGCACCTGTTGCCCCAGAAACTGTCGCGCCAGCTACGAGCTTGGAAAGATGGTACCTAAAAAGATTAATGCTGTGTCTCAATTGTGCAGTAAGGCAAATAATTTCCAGGAGGTGGCTGTCCCTTTGCCTACACCTCCGGCGATCGAGGTGGTCGCTGCCCCTTCGCCTACACTTCCAGTGATCGAGCTGCCTTTGGACAACACGGTGGGCTTGGATTCCTTGTCTGAGGAGGTATGGAGATGCCTGCAAGATGACAAGGTGAGAACTATTGGATTATACGGGATGGGGGGTGTGGGGAAAACAACCCTCTTGAAAAGAATCAATAATGAATTCCTCGAAACCAGCTTTGAATTTGATATAGTGATTTGGGTTGTTGTGTCCAAACCGGCAAGTGTGGAAAAAATCCAAGAAATGGTTCTCCGTCAGTGTGACGCTCCTGATAACAGATGGAAAGGTAGGAGTGAGGATGAAAAGGCTAAGGAAATATACAATATCTTGAAAACAAGGAAATTTATACTCTTGTTAGATGACATATGGGAGCAGCTAAATCTCTTAAAAATCGGGTTTCCTCTGAATGATCAAAATATGTCCAAAGTAATATTTACAACCCGATTTTTGAATGTGTGTGAAGCTATGGGAGCTGAGAGCATTAAAGTGGAGTGCTTGAAATTCAAGGACGCCTTCGCTTTGTTTCAAAGCAATGTGGGAGAAGCCACCTTCAATTCTCATCCAAGGATACCCAAGCTCGCAAAGATTGTCGTTGAAGAATGTAAAGGCCTGCCGCTTGCCCTCATGATTGCTGGAGGAGCAATGAAAGGAAAGAAAACTCCCCAAGAATGGCAGAAAAACATAGAACTGTTGCAGAGCTATCCATCAAAAGTTCCAGGTATGGAGAATGATTTGTTTCGAGTTTTAGCATTGAGTTATGACAACTTGAGCAAAGCCAACGTCAAATCATGTTTCCTATATTGCTCCATGTTCCCGGAAGATTGGGAAATTTCTTGCAAGCAGCTCATAGAACTATGGATAGGGGAGGGGTTTCTCGATGAATGGCATCACATACATGATGCACGTACTAATGGAGAGGAAATTATTGAACAGCTAAATGCTTCATGTCTGTTGGAGAGTGGTCAATATGAAAAGCATGTAAAAATGCATGATGTGATTCGGGACATGGCTTTGTGGTTGGCTTGTGAAAATGGGGAGAAGAAGAACAAATGCGTGATAAAAGAGCGTGGAAGATGGATTGAAGGTCACGAAATTGCAGAGTGGAAGGAGACCCAAAGAATGTCGTTGTGGGATAATAGTATTGAAGATTCCACTGAACCACCGGATTTTCGAAATCTCGAGACTTTGCTTGCATCAGGTGAGTCGATGAAGTCATTTCCAAGCCAATTCTTCAGACACATGTCTGCCATAAGAGTTCTGGACTTGTCAAATTCTGAATTGATGGTGTTACCTGCAGAGATTGGTAACCTAAAAACTCTGCATTATCTTAATTTGTCAAAAACAGAAATAGAGAGTCTCCCAATGAAGCTCAAAAATTTGACAAAACTAAGGTGCTTGATATTGGATGATATGGAAAAACTTGAAGCAATTCCATCTCAGTTGATATCAAGCCTTTCATCTTTGCAGTTGTTCAGTCTTTATGCTTCCATAGGTTGCAATGGAGACTGGGGATTCCTCTTAGAGGAGCTAGCGTGCTTGAAACATGTGAGTGACATATCTATCCCTCTAAGAAGTGTCCTTCACACCCAAAAGTCAGTCGACTCCCACAAGTTAGGAAGGAGCATAAGAAGGCTAAGCCTACAAGACTGCACTGGCATGACCACAATGGAACTATCCCCTTACCTACAGATTCTTCAAATATGGAGATGTTTTGATTTGGCAGATGTGAAAATCAATCTGGGAAGGGGACAAGAATTCTCCAAACTTTCCGAAGTGGAGATAATTAGGTGTCCAAAATTGCTGCACTTGACATGTCTTGCTTTTGCTCCAAACCTTTTGTCTCTCCGTGTGGAATACTGCGAGTCAATGCAAGAAGTGATCACAGAAGATGAAGAGATTGGAATTTCAGAAGTTGAACAATGTTCAGATGCATTCTCAGTACTCACAACTCTCAGTTTATCTTATTTATCAAATCTAAGGAGTATATGTGGAGGAGCTCTGTCATTTCCTTCCCTAAGAGAGATCACTGTGAAACACTGTCCAAGGCTAAGGAAGCTGACATTTGATTCCAACACCAACTGTTTGCGTAAAATCGAGGGAGAACAACACTGGTGGGATGGGTTGGATTGGGAAGATCAAACCATTAAGCAGAAACTCACTCAATATTTTGTGCCTAAATGA 2658 0.4229 MDFVSPILEIVNRLWDCCDKRAVFIRQLPENLKSLRDEMEELKNVYRDVKKRVEDEQKLQKEIKHVVTGWIRSVESMEGEVNEMLTKGEEEIKKKCLGTCCTCCTCCPRNCRASYELGKMVPKKINAVSQLCSKANNFQEVAVPLPTPPAIEVVAAPSPTLPVIELPLDNTVGLDSLSEEVWRCLQDDKVRTIGLYGMGGVGKTTLLKRINNEFLETSFEFDIVIWVVVSKPASVEKIQEMVLRQCDAPDNRWKGRSEDEKAKEIYNILKTRKFILLLDDIWEQLNLLKIGFPLNDQNMSKVIFTTRFLNVCEAMGAESIKVECLKFKDAFALFQSNVGEATFNSHPRIPKLAKIVVEECKGLPLALMIAGGAMKGKKTPQEWQKNIELLQSYPSKVPGMENDLFRVLALSYDNLSKANVKSCFLYCSMFPEDWEISCKQLIELWIGEGFLDEWHHIHDARTNGEEIIEQLNASCLLESGQYEKHVKMHDVIRDMALWLACENGEKKNKCVIKERGRWIEGHEIAEWKETQRMSLWDNSIEDSTEPPDFRNLETLLASGESMKSFPSQFFRHMSAIRVLDLSNSELMVLPAEIGNLKTLHYLNLSKTEIESLPMKLKNLTKLRCLILDDMEKLEAIPSQLISSLSSLQLFSLYASIGCNGDWGFLLEELACLKHVSDISIPLRSVLHTQKSVDSHKLGRSIRRLSLQDCTGMTTMELSPYLQILQIWRCFDLADVKINLGRGQEFSKLSEVEIIRCPKLLHLTCLAFAPNLLSLRVEYCESMQEVITEDEEIGISEVEQCSDAFSVLTTLSLSYLSNLRSICGGALSFPSLREITVKHCPRLRKLTFDSNTNCLRKIEGEQHWWDGLDWEDQTIKQKLTQYFVPK* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1293 885 Gene3D - 162 324 IPR027417 -
Vvi19g1293 885 SUPERFAMILY L domain-like 487 852 - -
Vvi19g1293 885 FunFam Probable disease resistance protein At1g63360 412 498 - -
Vvi19g1293 885 FunFam Probable disease resistance protein At1g61300 157 320 - -
Vvi19g1293 885 Gene3D - 412 497 IPR036388 -
Vvi19g1293 885 Gene3D - 325 411 IPR042197 -
Vvi19g1293 885 Gene3D Ribonuclease Inhibitor 510 738 IPR032675 -
Vvi19g1293 885 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 427 IPR027417 -
Vvi19g1293 885 Coils Coil 25 59 - -
Vvi19g1293 885 PRINTS Disease resistance protein signature 192 207 - -
Vvi19g1293 885 PRINTS Disease resistance protein signature 268 282 - -
Vvi19g1293 885 PRINTS Disease resistance protein signature 360 374 - -
Vvi19g1293 885 PRINTS Disease resistance protein signature 571 587 - -
Vvi19g1293 885 Pfam NB-ARC domain 178 414 IPR002182 GO:0043531
Vvi19g1293 885 Gene3D Ribonuclease Inhibitor 760 861 IPR032675 -
Vvi19g1293 885 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 27 846 - -
Vvi19g1293 885 FunFam Probable disease resistance protein At5g66910 324 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1293 Vvi-Chr19 21801776 21804433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1293 190 496 WRKY Transcription Factor Family AT5G45050 24.194 1.78e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1293 - K13459 vvi:100264978 1703.34