Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1277 ATGGCTGACCAAATTCCATTCGGTGTTGTGGAGCACATTTTGACCAACTTGGGGTCCTCGGCGTTTCAAGAAATTGGATCCATGTATGGTGTTCCAAAGGAGATGACCAAGCTCAAGGGGAAACTGGGCATCATCAAGGCTGTGCTTTTGGATGCTGAGGAGAAGCAGCAGCAGAGCAATCATGCAGTCAAAGATTGGGTCAAAGATTGGGTCCGGAGTCTCAAAGGCGTTGTGTATGACGCAGATGACTTGCTGGATGACTATGCAACCCATTATCTTCAGCGAGGAGGATTGGCAAGGCAGGTCAGTGATTTCTTCTCATCTGAAAATCAAGTTGCTTTTCGTTTAAACATGAGTCATAGACTCAAGGATATCAAAGAAAGGATAGATGACATTGAAAAAGGCATCCCCATGTTAAATCTGACTCCACGGGACATAGTACATAGGAGAGACAGCCATTCATTCGTGTTGCCGTCTGAAATGGTAGGAAGAGAAGAAAACAAAGAGGAGATAATAGGGAAGTTGTTGTCGTCCAAGGGTGAAGAAAAGCTTTCGGTTGTTGCCATTGTAGGCATTGGGGGGTTGGGAAAGACCACCCTTGCTAAATTGGTATACAATGATGAAAGAGTGGTCAATCATTTTGAGTTTAAGATATGGGCTTGCATTTCTGATGATTCTGGTGATAGTTTTGATGTTATTATGTGGATCAAAAAAATTTTAAAATCTCTGAATGTTGGGGATGCTGAAAGTCTGGAGACTATGAAAACTAAGCTTCATGAAAAAATAAGTCAAAAGAGGTACTTGCTAGTCCTCGATGATGTTTGGAATCAAAATCCTCAAAAATGGGATGACGTGAGAACTTTATTAATGGTTGGGGCTATTGGTAGTAAAATTGTAGTGACCACCCGTAAACCAAGAGTTGCATCAATCATGGGAGATAATTCTCCCATTAGTTTGGAAGGTCTGGAACAAAATCACTCCTGGGATTTATTTTCAAAAATCGCATTTAGAGAAGGCCAGGAGAATTTGCATCCAGAAATTCTAGAAATTGGAGAAGAAATTGCAAAAATGTGCAAGGGAGTTCCTCTCGTCATTAAGACTTTAGCAATGATATTGCAGTCTAAAAGAGAACAGGGCGAATGGTTGTCTATTAGAAACAATAAAAATTTGTTGTCACTTGGCGATGAAAATGAGAATGTTCTAGGGGTGCTGAAATTAAGTTATGATAATTTGCCAACTCATTTGAGACAATGTTTTACATATTGTGCTTTATTTCCAAAAGACTTTGAGATTGAGAAAAAGTTGGTGGTACAACTATGGATAGCACAAGGTTATATTCAACCTTATAATAATAAGCAATTAGAGGATATAGGGGATCAATATGTTGAGGAATTATTGTCAAGGTCATTGATTCCAGACAATATAGGAGAATTGATCAATCTTAGACACTTGGAGAATAGTAGATGTCATGACTTGACTCATATGCCACATGGAATCGGCAAGTTGACTTTACTTCAAAGTCTACCATTGTTTGTGGTTGGGAATGATATAGGGCAGTCTAGGAATCACAAAATTGGTGGCTTGAGTGAATTGAAAGGCCTTAACCAACTAAGAGGAGGGTTATGCATACGTAATCTTCAAAACGTGAGGGATGTTGAACTGGTATCCAGGGGGGGAATTTTGAAAGGAAAACAATGTCTTCAGTCCTTGAGATTGAAATGGATACGGTCGGGCCAAGATGGGGGGGATGAGGGTGATAAGTCAGTGATGGAAGGCCTTCAACCACACCGACACCTAAAGGATATCTTTATACAAGGTTACGAAGGTACGGAGTTTCCAAGTTGGATGATGAATGATGAGTTGGGTTCCCTGTTTCCCTACCTAATTAAAATTGAAATTTCAGGATGTTCAAGATGCAAAATTCTGCCACCCTTTTCTCAACTCCCTTCTCTCAAGTCTTTGAAGCTTAAGTTTATGGAAGAACTGGTGGAGTTAAAGGAGGGTTCATTAACAACGCCACTCTTCCCATCTCTTGAATCGCTCGAACTCCATGTCATGCCAAAGTTGAAGGAATTGTGGAGGATGGACTTACTAGCAGAGGAAGGTCCTTCATTTTCTCATCTTTCGAAGTTATATATTCGTGCATGCTCTGGTTTGGCATCACTGCATCCTTCTCCTTCTCTTTCTCAATTAGAAATCAGAGATTGCCCTAACTTGGCATCCTTGGAACTGCATTCGTCTCCTTCTCTTTCTCAATTAGAGATCATCAATTGCCATAACTTGGCATCCTTGGAACTGCATTCGTCTCCTTCTCTTTCTCAATTAGAGATCAGAAATTGCCATAACTTGGCATCCTTGGAACTGCATTGGTCTCCTTCTCTTTCTCAATTAGAGATCAGATATTGCCATAACTTGGCATCCTTGGAACTGCATTCGTCTCCTTCTCTTTCTCAATTAACGATCATCGATTGCCATAACTTGGCATCCTTGGAACTGCCGTCATCTCTTCGTCTTTCTGATTTAGATATCAGAAAATGCCCTAACTTGGCATCCTTGGAACTGCATTCTTCTCCTTCTCTTTCTCAATTAACGATCATCAATTGCCATAACTTGGCATCCTTGGAACTGCATTCATCTCCTTGTCTTTCTCGATCATGGATCTATGAATGCCCTAACTTGGCATCCTTCAAAGTGGCTCCATTACCTTCTCTTGAGACACTATCTCTGTTCACAGTTAGATATGGTGTGATATGCCAGATAATGTCTGTCTCTGCTTCGTTGAAGTCTCTGTATATTGGAAGCATAGATGATATGATATCTCTCCCGAAGGAGCTACTTCAACATGTTTCTGGCTTGGTAACGTTACGGATCCGTGAGTGTCCTAACTTGCAATCCTTGGAACTGCCGTCATCTCCTTCTCTTTCTGAATTAAGGATCATAAATTGCCCTAACTTGGCATCCTTCAATGTGGCATCATTACCTCGTCTTGAGGAACTAAGCCTGCGTGGAGTCAGAGCAGAGGTACTGAGGCAGTTCATGTTTGTCTCTGCTTCTTCTTCATTGAAGTCTCTGTGTATACGGGAGATTGATGGTATGATATCTCTCCGAGAGGAGCCGCTTCAATATGTTTCCACTCTCGAAACTCTCCACATTGTTAAGTGCTCTGGTTTGGCAACATTACTACACTGGATGGGCAGCCTTTCCTCGCTTACGGAACTTATTATTTTTGGCTGCTCGGAATTGAAATCACTGCCAGAAGAGATCTATTCCCTTAAAAAACTGCAGACATTTTATTTCTGTGATTATCCAGACCTAGAGGAAAGATACAAGGAAACAGGTGAAGACCGGGCCAAGATTGCTCATATCCCACATGTTAGTTTCTACAGTGATTCGATTATGTATAGTAAGATAAAAGACTGGCAGCTAATGTGCATAGAATTTGTAGAAGAGAATAAAGATTTGATCTAA 3468 0.4089 MADQIPFGVVEHILTNLGSSAFQEIGSMYGVPKEMTKLKGKLGIIKAVLLDAEEKQQQSNHAVKDWVKDWVRSLKGVVYDADDLLDDYATHYLQRGGLARQVSDFFSSENQVAFRLNMSHRLKDIKERIDDIEKGIPMLNLTPRDIVHRRDSHSFVLPSEMVGREENKEEIIGKLLSSKGEEKLSVVAIVGIGGLGKTTLAKLVYNDERVVNHFEFKIWACISDDSGDSFDVIMWIKKILKSLNVGDAESLETMKTKLHEKISQKRYLLVLDDVWNQNPQKWDDVRTLLMVGAIGSKIVVTTRKPRVASIMGDNSPISLEGLEQNHSWDLFSKIAFREGQENLHPEILEIGEEIAKMCKGVPLVIKTLAMILQSKREQGEWLSIRNNKNLLSLGDENENVLGVLKLSYDNLPTHLRQCFTYCALFPKDFEIEKKLVVQLWIAQGYIQPYNNKQLEDIGDQYVEELLSRSLIPDNIGELINLRHLENSRCHDLTHMPHGIGKLTLLQSLPLFVVGNDIGQSRNHKIGGLSELKGLNQLRGGLCIRNLQNVRDVELVSRGGILKGKQCLQSLRLKWIRSGQDGGDEGDKSVMEGLQPHRHLKDIFIQGYEGTEFPSWMMNDELGSLFPYLIKIEISGCSRCKILPPFSQLPSLKSLKLKFMEELVELKEGSLTTPLFPSLESLELHVMPKLKELWRMDLLAEEGPSFSHLSKLYIRACSGLASLHPSPSLSQLEIRDCPNLASLELHSSPSLSQLEIINCHNLASLELHSSPSLSQLEIRNCHNLASLELHWSPSLSQLEIRYCHNLASLELHSSPSLSQLTIIDCHNLASLELPSSLRLSDLDIRKCPNLASLELHSSPSLSQLTIINCHNLASLELHSSPCLSRSWIYECPNLASFKVAPLPSLETLSLFTVRYGVICQIMSVSASLKSLYIGSIDDMISLPKELLQHVSGLVTLRIRECPNLQSLELPSSPSLSELRIINCPNLASFNVASLPRLEELSLRGVRAEVLRQFMFVSASSSLKSLCIREIDGMISLREEPLQYVSTLETLHIVKCSGLATLLHWMGSLSSLTELIIFGCSELKSLPEEIYSLKKLQTFYFCDYPDLEERYKETGEDRAKIAHIPHVSFYSDSIMYSKIKDWQLMCIEFVEENKDLI* 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1277 1155 Gene3D Ribonuclease Inhibitor 988 1107 IPR032675 -
Vvi19g1277 1155 Pfam NB-ARC domain 164 410 IPR002182 GO:0043531
Vvi19g1277 1155 Gene3D - 150 316 IPR027417 -
Vvi19g1277 1155 Gene3D - 321 412 IPR042197 -
Vvi19g1277 1155 Gene3D Ribonuclease Inhibitor 453 739 IPR032675 -
Vvi19g1277 1155 Gene3D - 9 125 - -
Vvi19g1277 1155 Gene3D Ribonuclease Inhibitor 897 987 IPR032675 -
Vvi19g1277 1155 Gene3D Ribonuclease Inhibitor 744 837 IPR032675 -
Vvi19g1277 1155 Pfam Rx N-terminal domain 9 104 IPR041118 -
Vvi19g1277 1155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 422 IPR027417 -
Vvi19g1277 1155 FunFam Probable disease resistance protein At1g63360 408 493 - -
Vvi19g1277 1155 PANTHER DISEASE RESISTANCE PROTEIN RP 64 471 IPR044974 GO:0006952
Vvi19g1277 1155 PRINTS Disease resistance protein signature 646 662 - -
Vvi19g1277 1155 PRINTS Disease resistance protein signature 186 201 - -
Vvi19g1277 1155 PRINTS Disease resistance protein signature 261 275 - -
Vvi19g1277 1155 PRINTS Disease resistance protein signature 358 372 - -
Vvi19g1277 1155 SUPERFAMILY L domain-like 797 1112 - -
Vvi19g1277 1155 SUPERFAMILY L domain-like 471 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1277 Vvi-Chr19 21494508 21502822 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1277 184 462 WRKY Transcription Factor Family AT5G45050 23.397 2.19e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1277 - - vvi:100259870 1244.18