Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1268 ATGGTCGAGGACATAACTTCAAGAGACAGCAAACAGTTTCATATTAATCTTTTGGGGTGCAGGAATTTGACATTCTACAACGTTGCAATTAGTGCACCAAAAGACAGCCTTAACACAGATGGAATTCACATTGGACGTTCCTCAGGGATCGATATCACCGATTCAGCCATAGAAACCGGAGATGATTGTGTCTCAATTAGTGATGGCAGTGGGCAAATTAATATCCAAAGAATAACCTGTGGACTTGGCCATGGCATCTGTGTGGGAAGTCTAGGAAAGTACCCCGATGAAGAATCTATGGTTGGCATTAGTGTCAAGAACTGCACCTTCATCAACACCCAGAATGGCGTCAGAGTGAAGACATGGCCTGCTTCTCTCATCAAGACACTACCTCTGAAATGCATCTTGAAGATATTGTCATGA 423 0.4326 MVEDITSRDSKQFHINLLGCRNLTFYNVAISAPKDSLNTDGIHIGRSSGIDITDSAIETGDDCVSISDGSGQINIQRITCGLGHGICVGSLGKYPDEESMVGISVKNCTFINTQNGVRVKTWPASLIKTLPLKCILKILS* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1268 140 ProSitePatterns Polygalacturonase active site. 77 90 IPR000743 GO:0004650|GO:0005975
Vvi19g1268 140 Gene3D - 1 129 IPR012334 -
Vvi19g1268 140 SMART pbh1 47 68 IPR006626 -
Vvi19g1268 140 SMART pbh1 100 121 IPR006626 -
Vvi19g1268 140 SMART pbh1 20 46 IPR006626 -
Vvi19g1268 140 SUPERFAMILY Pectin lyase-like 2 123 IPR011050 -
Vvi19g1268 140 PANTHER - 2 124 - -
Vvi19g1268 140 Pfam Glycosyl hydrolases family 28 2 125 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1268 Vvi-Chr19 21334074 21334496 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1268 2 125 Glycoside Hydrolase AT3G07850 53.226 1.92e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1268 K01213 K01184 vvi:109121790 242.662