Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1265 ATGGGAAGTCTTGGAAAGTACTCCAATGAAGAACCTGTGGTTGGCATTAGTGTCAAGAACTGTACCTTCACCAACACCCAGAATGGCGTGAGAGTGAAGACATGGCCTGCTTCCCATCAAGGCACTGCCTTTGAAATGCATTTTGAAGATATTGCTATGAATAATGTTGGCAATCCCATAATCATAGATCAAGAGTACTGCCCCCATAACCAATGCAACTTGAAGATTCCATCACGCATTAAGCTCAACAATGTTAGCTTCAGAAACATCTGA 273 0.4249 MGSLGKYSNEEPVVGISVKNCTFTNTQNGVRVKTWPASHQGTAFEMHFEDIAMNNVGNPIIIDQEYCPHNQCNLKIPSRIKLNNVSFRNI* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1265 90 Pfam Glycosyl hydrolases family 28 1 90 IPR000743 GO:0004650|GO:0005975
Vvi19g1265 90 SUPERFAMILY Pectin lyase-like 1 90 IPR011050 -
Vvi19g1265 90 PANTHER - 1 90 - -
Vvi19g1265 90 Gene3D - 1 90 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1265 Vvi-Chr19 21281602 21282236 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1265 1 90 Glycoside Hydrolase AT3G14040 53.333 3.19e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1265 K01213 - vvi:100247162 177.178