Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1263 ATGAATATCACAGCAACCTCTCTTCTGCTATTGCTAGCATCTTCTACAGAAGTGTTCGGTGATACCATTTTTTACGTTACCAAATATGAGGCCAAGGCTGATGGAAACACTGATATTACCCAGAATCTGAGATTCAACTTCATCACCAATAGCATGGTCAAGGACATAACTTCAAGAGATAGCAAACAGTTTCAAATGAATCTTTTGGGGTGCAAGAATTTGACTTTCTACAACGTTGGAATTAGTGCACCAGAAGTGAGCATTAATACAGATGGAATTCACATTGGACGGTCCTCAGGGTTCAATATAACCAATTCAACTGTAGAGACCGGAGATGATTGTGTCTCAATTGGTGATGGCAGTGAGCAAATTAATATCCAAAGCGTAACCTGCGGACCCGGCTATGGCATCAGTGTGGGAAGTCTAGGAAAGTGCCCCAATGAAGAACCTGTGGTTGGCATTAGTGTCAAGAACTGTACCTTCACCCCCAGAATGGCATGA 501 0.4251 MNITATSLLLLLASSTEVFGDTIFYVTKYEAKADGNTDITQNLRFNFITNSMVKDITSRDSKQFQMNLLGCKNLTFYNVGISAPEVSINTDGIHIGRSSGFNITNSTVETGDDCVSIGDGSEQINIQSVTCGPGYGISVGSLGKCPNEEPVVGISVKNCTFTPRMA* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1263 166 PANTHER - 38 162 - -
Vvi19g1263 166 Pfam Glycosyl hydrolases family 28 34 161 IPR000743 GO:0004650|GO:0005975
Vvi19g1263 166 SUPERFAMILY Pectin lyase-like 10 162 IPR011050 -
Vvi19g1263 166 Gene3D - 20 165 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1263 Vvi-Chr19 21265537 21266592 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1263 42 159 Glycoside Hydrolase AT3G14040 57.627 2.25e-46 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1263 K01213 - vvi:100251285 257.684