Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1261 ATGTTTAGGCGCAGCTGTAAATCTCGAGCTTTGTTCTTTATTCCCGTTTTTTTTCTTCCGGCGACCACACGAATGAACGATAAATATGGCAGGAATTGTTGGATAATGCTGATTAATTTCCAATTGTTGCAATTAAATCTCTCAAAGTTGGAGACTTCCAAGGAGGGAGAAGAGAACCTATTCCAACAGAAATTGAAGGAAGCTATTTGGGTCCCTCAGCTTTTCCGGATTAGTGTTGCACAACATGAGTACATGAACGAGAAAAGGCAGAGGATAACAGCCAGGGCTGTTGTTCCAGTTGATTTTGCAGCTGAATCCAGATTACTGTTGGAGGAGATATCAAAGATGAAGACTTCACAATAG 363 0.4105 MFRRSCKSRALFFIPVFFLPATTRMNDKYGRNCWIMLINFQLLQLNLSKLETSKEGEENLFQQKLKEAIWVPQLFRISVAQHEYMNEKRQRITARAVVPVDFAAESRLLLEEISKMKTSQ* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1261 120 Gene3D - 22 118 IPR012340 -
Vvi19g1261 120 Pfam Replication factor-A C terminal domain 41 109 IPR013955 -
Vvi19g1261 120 SUPERFAMILY Nucleic acid-binding proteins 41 116 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1261 Vvi-Chr19 21204731 21206814 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1261 53 120 Core DNA Replication Machinery Family AT5G08020 70.588 4.92e-26 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1261 K07466 - vvi:100255412 134.035