Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1247 ATGGAAATGAGAGTGGGGATGCTTTTGAAAGATGTGGAGTTGCTGAATGCTGTTTCCAGTGGTTCCCCTTCTGATATTCAATTTGTTACAGTTATGACAATATATGCTTTTGTTCAAGCTGCTGCTTGCTTGCATACGGTTTTTGTCAATAAGAATGCAAATACTCTTGAAATCAATTTCAACGCTTCAATAATTCAGTATGAAGTATTGGGCACTCTAGAGTTCACTTCTGATAGGAAAAGAATCTCAGCTATGGTAAAAGACTGCCAGAATAGAAAGATTTTCCTTTTGTCAAAAGGAGCAGATGAAGCCATCAAACCTGATGCATGTGCTGGACAACAAACATGA 348 0.3793 MEMRVGMLLKDVELLNAVSSGSPSDIQFVTVMTIYAFVQAAACLHTVFVNKNANTLEINFNASIIQYEVLGTLEFTSDRKRISAMVKDCQNRKIFLLSKGADEAIKPDACAGQQT* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1247 115 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 55 105 IPR023299 GO:0000166
Vvi19g1247 115 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 36 106 - -
Vvi19g1247 115 Gene3D - 3 114 IPR023299 GO:0000166
Vvi19g1247 115 Pfam Cation transport ATPase (P-type) 63 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1247 Vvi-Chr19 20959757 20960173 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1247 6 115 Primary Pumps ATPases AT5G44240 57.143 8.06e-38 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1247 K01530 - vvi:100252404 160.614