Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1245 ATGTGGGGGGACGAAGGAGGGTTCTCATTGCTGGATTACCAAGTCCAGCCGGAGGTTGATGTTGGGGTGGCGGTTTCTGGGTTGGTTTTGCCGGAGCGGGGTGGGGTTTCGGACATGGCAGTGCCCGCGTTGCCGGAGTTCAACATGGGGGGTTTGTGCGGCATTGCCGGAGTTCAGAGCTTTGGGGGAGGGTACCAGCAAGATGTGTGTGAGTTTGGAGATGAATGCGGAGGGTTTGTGCCTGATTTCCGGCCGGTTTATCCTGCTACGGCGGGAGATAATTGGGGAATTCAAGGAAATCATATAGCAGGGATTGAAGAATCCAATACAAAGGTTGGGAGGTACTCAGTTGAGGAAAGGAAGGATAGAATTCTCAGATATTTGAAGAAGAGAAATCAAAGGAACTTCAACAAAACCATTAAGTACGCATGCCGGAAGACTCTGGCAGACAGGCGTGTCCGGGTCCGGGGGAGATTTGCAAGGAACAGCGAGCTATGCGAAGAAGAAATGGCAGTAAAGAAGAATGAAAACACACAAGAAGAGAAAGAACTATACTACAATGACACTGTGCAGATGAAGCATGATGAGGAGGACTGGCTGCAAGAAGCAATTGCAAGCCTCATGTATATGCCATATTTTTCTGGATGA 648 0.4938 MWGDEGGFSLLDYQVQPEVDVGVAVSGLVLPERGGVSDMAVPALPEFNMGGLCGIAGVQSFGGGYQQDVCEFGDECGGFVPDFRPVYPATAGDNWGIQGNHIAGIEESNTKVGRYSVEERKDRILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNSELCEEEMAVKKNENTQEEKELYYNDTVQMKHDEEDWLQEAIASLMYMPYFSG* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1245 215 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 81 177 IPR045281 GO:0009909
Vvi19g1245 215 ProSiteProfiles CCT domain profile. 120 162 IPR010402 GO:0005515
Vvi19g1245 215 Coils Coil 163 183 - -
Vvi19g1245 215 Pfam CCT motif 120 162 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1245 Vvi-Chr19 20911323 20912408 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1245 77 172 C2C2-CO-like Transcription Factor Family AT5G24930 36.735 1.43e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi19g1245 CCT 1.5e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1245 - - vvi:100264678 443.736