Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1224 ATGGATGCTGATAAAGAAGACGATCAATTTTTGTTGCCAGGGTTTCGGTTTCATCCCACCGATGAAGAGCTAGTGTCCTTTTATCTTCTCAAAAAGATCGAGAAGAAGCTGACCGCTATTGAGCTTATAAAACAGATTGACATCTACAAATATGACCCCTGGGATCTTGCAAAAAATAGCCGGACTGTTACAGACAAAGAGTGGTATTTCTTTTGCAGAAGAGGGAGAAAATATAGGAATAGCGTAAGACCCAATAGAGTCACGGGGTCTGGATTTTGGAAAGCAACCGGCATAGACAAGCCAATATATTCTGTTGAAGAAGGACACAGCCGCGGTGACTGCATTGGGTTGAAGAAATCATTAGTGTACTATTGTGGAAGTGCAGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTCCGCCTCCCCGCAGACCAGAAAAATGCTACTCTCCCCACTGCCAAGGCTGCTGATCAAGAAGCTGAAGTATGGACACTTTGTCGAATTTTTAAGCGAAATGTGCCACATAGAAGGTACACACCAGATTGGAGAGAAGTACCTGCTAAACGCAACCCAACGAATTCAAAACCTGAAACATGTGATATGAGTCCAGAAAATTGGGAAGGCTACGTTAGTTCTGGGGCTCCAGTTTCTCTTCATAAAGGGAAGAAGCCTGTTGGTAGTCACATTGATGAAGGGAACCCACTGCCCGCAGGCCAGGTGAGCTCGATTGTTCAAGGTTCACAACCAGAGTCATGTTCATCAAGCATTTTGAGTAACGATGCTAGGGAGTTCTTTGCACATGGAAATTGGGATGAGATCGTATCATTCATGGAGCTTTCTTTTGATCCATCATCTATAAATAATTTTAAAATTATGCATTAG 888 0.4302 MDADKEDDQFLLPGFRFHPTDEELVSFYLLKKIEKKLTAIELIKQIDIYKYDPWDLAKNSRTVTDKEWYFFCRRGRKYRNSVRPNRVTGSGFWKATGIDKPIYSVEEGHSRGDCIGLKKSLVYYCGSAGKGTKTDWMMHEFRLPADQKNATLPTAKAADQEAEVWTLCRIFKRNVPHRRYTPDWREVPAKRNPTNSKPETCDMSPENWEGYVSSGAPVSLHKGKKPVGSHIDEGNPLPAGQVSSIVQGSQPESCSSSILSNDAREFFAHGNWDEIVSFMELSFDPSSINNFKIMH* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1224 295 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 224 - -
Vvi19g1224 295 MobiDBLite consensus disorder prediction 222 253 - -
Vvi19g1224 295 ProSiteProfiles NAC domain profile. 11 173 IPR003441 GO:0003677|GO:0006355
Vvi19g1224 295 Pfam No apical meristem (NAM) protein 13 143 IPR003441 GO:0003677|GO:0006355
Vvi19g1224 295 SUPERFAMILY NAC domain 10 173 IPR036093 GO:0003677|GO:0006355
Vvi19g1224 295 Gene3D NAC domain 20 176 IPR036093 GO:0003677|GO:0006355
Vvi19g1224 295 FunFam NAC domain-containing protein 35 20 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1224 Vvi-Chr19 20288471 20290073 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1224 8 173 NAC Transcription Factor Family AT5G39820 56.667 1.11e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi19g1224 NAM 1.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1224 - - vvi:100243956 623.239