Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1221 ATGAGTAGTACGGATACAGTTAAGGATGATGATCTTCCTGGATTTCGGTTTCATCCCACAGATGAAGAACTTGTTTCCTTTTATCTTCGTCGGAAGATCGAGAAGCAGCTAATCAGTCTTGAATTCATCAAGCAGATTGACATCTACAAATATGACCCCTGGGATCTTGCAAAAAATAACAATACTGTTACAGACAAGGAGTGGTACTTCTTTTGCAAAAGAGGGAGAAAGTATAGGAATAGCGTAAGACCGAATAGAGTCACGGGGTCTGGATTTTGGAAGGCAACAGGCATAGACAAGCCAATATATTCAGCTGAAGGACAAGGCCATGGCTGCATTGGACTCAAGAAATCACTAGTATACTACCGCGGAAGTGCAGGAAAAGGAACCAAAACTGAATGGATGATGCATGAATTTCGCCTCCCAGCAGACCAAAAAAATGCCCAGGCTGCTGATGAAGAAGTTATAATTAGATGGTATACTATATTTATATTTGTTGAATTGCATAAAATAGATAGGAGAGGAAAAAGGAGGAAGAAAGTGAAAAAAGAAAAAAAGAAAAACCATATACATATATCTATATTTTTTGTCTTTTTTAGTTGGGAGTTTTTTTTTTTTTTTAGATTTTTTTTTCTTTCAGCCTAA 645 0.369 MSSTDTVKDDDLPGFRFHPTDEELVSFYLRRKIEKQLISLEFIKQIDIYKYDPWDLAKNNNTVTDKEWYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPIYSAEGQGHGCIGLKKSLVYYRGSAGKGTKTEWMMHEFRLPADQKNAQAADEEVIIRWYTIFIFVELHKIDRRGKRRKKVKKEKKKNHIHISIFFVFFSWEFFFFFRFFFLSA* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1221 214 ProSiteProfiles NAC domain profile. 11 162 IPR003441 GO:0003677|GO:0006355
Vvi19g1221 214 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 176 - -
Vvi19g1221 214 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Vvi19g1221 214 SUPERFAMILY NAC domain 12 153 IPR036093 GO:0003677|GO:0006355
Vvi19g1221 214 Pfam No apical meristem (NAM) protein 13 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1221 Vvi-Chr19 20238195 20240748 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1221 7 140 NAC Transcription Factor Family AT1G26870 70.149 5.61e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi19g1221 NAM 7.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1221 - - vvi:100268026 328.946