Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1219 ATGGATGCTACCATGGATGATGAACAAGTTGTGCTTCCAGGGTTTCGGTTTCATCCCACAGATGAAGAACTCGTTTCATTTTATCTTCGGAGAAAGATAGAGAAAAAGCCCATTAGTTTTGAACTCATCAAACAGATGGATATTTACAAATACGATCCCTGGGATCTTCCAACGAATAGTAGTGTTACAGACAAGGAGTGGTATTTCTTTTGCAAAAGAGGGAGAAAGTACAGGAATAGCATACGACCCAATAGAGTTACGGGGTCCGGATTTTGGAAAGCAACAGGCATAGACAAGCCGATATATTCTGTTCAAGGACGAGGACATGACTGCGTTGGACTCAAGAAATCATTAGTATACTACCGTGGAAGTGCAGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTCCCTGCAGACCAGAAAAATACTACTCACAATGCCACGACTGCTGATGACGAAGTTGAAATATGGACGCTTTGTCGGATTTTTAAGCAAAATGTGTCATACAGAAAGTCGACACCAGATTGGAGAGAAACATCTGCAAAACGCAAGCCAACAAAGTCAAGGCCTAAAACAGGCAATATGGATTCAGAAAATTGGGAAGGTTACATAAGTTTTGGAGCTCCAGAGGCTCTTGATAACGAGAAGAAGCTTTTTGTTGGTCACAATATGAATGAAAGAAACCAGTTCCATGTGGTTTCAGATCCAGAGTCATGCTTTAGTGTTTTGAGTGAGGAAGCTAGGGAGTTCTTTACAAATAGGAATTGGGATGAGATCTTATCAGCCATGGACTATGATTTTGATCCATATCATTTTTAA 831 0.4079 MDATMDDEQVVLPGFRFHPTDEELVSFYLRRKIEKKPISFELIKQMDIYKYDPWDLPTNSSVTDKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSVQGRGHDCVGLKKSLVYYRGSAGKGTKTDWMMHEFRLPADQKNTTHNATTADDEVEIWTLCRIFKQNVSYRKSTPDWRETSAKRKPTKSRPKTGNMDSENWEGYISFGAPEALDNEKKLFVGHNMNERNQFHVVSDPESCFSVLSEEAREFFTNRNWDEILSAMDYDFDPYHF* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1219 276 SUPERFAMILY NAC domain 7 169 IPR036093 GO:0003677|GO:0006355
Vvi19g1219 276 Gene3D NAC domain 20 174 IPR036093 GO:0003677|GO:0006355
Vvi19g1219 276 Pfam No apical meristem (NAM) protein 13 140 IPR003441 GO:0003677|GO:0006355
Vvi19g1219 276 ProSiteProfiles NAC domain profile. 11 169 IPR003441 GO:0003677|GO:0006355
Vvi19g1219 276 MobiDBLite consensus disorder prediction 178 200 - -
Vvi19g1219 276 FunFam NAC domain-containing protein 35 20 172 - -
Vvi19g1219 276 MobiDBLite consensus disorder prediction 179 195 - -
Vvi19g1219 276 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1219 Vvi-Chr19 20226011 20227553 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1219 1 178 NAC Transcription Factor Family AT5G39820 55.392 1.76e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi19g1219 NAM 1.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1219 - - vvi:100257751 588.571