Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1217 ATGATCAAGAGTAGCATGGATGCAACAAAGGATGATGATCAAGTTGTGCTTCCGGGATTTCGGTTTCATCCGACAGATGAAGAACTTGTTTCGTTTTATCTTCAGAGAAAGATCGAGAAGAAGCTGATCAGTATTGAATTCATCAAGCAGATCGACATCTACAAATACGAACCCTGGGATCTTGCGAAAAATATTAATACTCTTACAGACAAGGAATGGTACTTCTTTTGCAAAAGAGGAAGAAAATACAGGAATAGCATAAGACCCAACAGAGTCACGAGGTCCGGATTTTGGAAAGCCACAGGCATAGACAAGCCAATATATTCTAACAATGGAGAAGGCCATGACTGTATTGGGCTGAAGAAATCCTTAGTATACTACCGTGGAAGTGCAGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTCCCCGCAAACCAGAAAAATACCAACCTCCCCAATGCCAAGGCTGCTGACCAAGAAGCTGAAATATGGACACTATGTCGAATTTTCAAGCGAGATGTGTCGTACAGAAAGTACACACCAGATTGGAGAGAATCATCTGCTAGACACAATCCAGTGAATGCAAGAACTAAAACATGCGATGCGGATTCGGAAAACTTGGAATATTACAATATTAGTTTTGGAGCTTCAGCTGCTCTTGATGATGAGAAGAAGCCTGTTGTTGGTCACAGTATGGATGGAAGGATCCAGTTGCATGTAGGTTCAGAGCCGGAGTCATGCTCAACTGTTTTGAGTGAGGAAGCTAGGGAGTTCTTTACAAATGGGAATTGGGATGAGATTGTATCAGCCATGGATTTTGCTTTTGATCCATATCATCTGTGA 855 0.4211 MIKSSMDATKDDDQVVLPGFRFHPTDEELVSFYLQRKIEKKLISIEFIKQIDIYKYEPWDLAKNINTLTDKEWYFFCKRGRKYRNSIRPNRVTRSGFWKATGIDKPIYSNNGEGHDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPANQKNTNLPNAKAADQEAEIWTLCRIFKRDVSYRKYTPDWRESSARHNPVNARTKTCDADSENLEYYNISFGASAALDDEKKPVVGHSMDGRIQLHVGSEPESCSTVLSEEAREFFTNGNWDEIVSAMDFAFDPYHL* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1217 284 SUPERFAMILY NAC domain 14 176 IPR036093 GO:0003677|GO:0006355
Vvi19g1217 284 ProSiteProfiles NAC domain profile. 16 176 IPR003441 GO:0003677|GO:0006355
Vvi19g1217 284 Pfam No apical meristem (NAM) protein 18 146 IPR003441 GO:0003677|GO:0006355
Vvi19g1217 284 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 214 - -
Vvi19g1217 284 Gene3D NAC domain 25 180 IPR036093 GO:0003677|GO:0006355
Vvi19g1217 284 FunFam NAC domain-containing protein 35 25 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1217 Vvi-Chr19 20170778 20172315 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1217 13 176 NAC Transcription Factor Family AT5G39820 58.427 8.98e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi19g1217 NAM 4.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1217 - - vvi:100249286 596.275