Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1046 ATGAGTAAGTTTGTGTTAAAGGAGGCTCACAGAGATGCCAACGAAAGAGCGGGACATGGGATGATGACTGGTTTTGTATTGAACCTGATGGCATATAGGAGGTATACAAAAAGGTCCATGCCTCCATACGAGCTGATCCCACCCCAAAGAAATTTGAGAAGGAGCCTCCAAAGGTGCATAAGAAGCACCTTGTTACGGAAGCTTATGTCTGCTTACAGTGGTCGACAGTCAGTGGAGTTAAACTCCATTGCATTCTTATTTGATGGTTGTCGACTCCGTGGAGAGCAAACTCCAGATGAGCTTGAAATGAAGGATGGTGATGAAATAAATGCAATGCTGCACCAAACTGGAAGGGGATATCAATTCTCCTATCATATGTACCTTTTTCCCTCGGCATTACACATCAGGCTGAAGCTAAAACCAGTGTGGGTGCAGTACTAG 441 0.4467 MSKFVLKEAHRDANERAGHGMMTGFVLNLMAYRRYTKRSMPPYELIPPQRNLRRSLQRCIRSTLLRKLMSAYSGRQSVELNSIAFLFDGCRLRGEQTPDELEMKDGDEINAMLHQTGRGYQFSYHMYLFPSALHIRLKLKPVWVQY* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1046 146 Pfam Ubiquitin-2 like Rad60 SUMO-like 61 113 IPR022617 -
Vvi19g1046 146 PANTHER SMALL UBIQUITIN-RELATED MODIFIER 59 118 - -
Vvi19g1046 146 SUPERFAMILY Ubiquitin-like 61 119 IPR029071 -
Vvi19g1046 146 Gene3D - 54 126 - -
Vvi19g1046 146 ProSiteProfiles Ubiquitin domain profile. 65 118 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1046 Vvi-Chr19 15137462 15139011 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1046 - - vri:117910420 152.14