Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1020 ATGTCAGAGATCACAGTTGCTGACCCCATTCATGAAACCAACACAACCAGAGCTCTCACAACCTCTACTTCCACTAGCCATGATACTTCCCCTGAGCCTTTTGACAGTGAGCGAGTTCCTGTCACCCTAGGAACTGATATTCGTAGCTTTCTTCGTGTTGCCAACCGGGTTGAACCCCATGACCCTCGTATTGCTTATCTCTGCCGTGTTCATGCTTTTGAAATGGCACATATCAAGGATACCTATTCAACTGGACGGGGCGTTCGGCAATTTAAAACTGCTCTCCTTCAGCGGCTTGAACAGGATGAAGTAACTACTATTGCAAAAAGGAAAGAAAAGTCTGATCTAGGTGAACTTCGACGCGTTCATCGTCATTATAAGAACATTATTGACCAACGTAGTGATTCATGGGATTTAGAAAATAGGTAA 429 0.4429 MSEITVADPIHETNTTRALTTSTSTSHDTSPEPFDSERVPVTLGTDIRSFLRVANRVEPHDPRIAYLCRVHAFEMAHIKDTYSTGRGVRQFKTALLQRLEQDEVTTIAKRKEKSDLGELRRVHRHYKNIIDQRSDSWDLENR* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1020 142 Gene3D - 33 142 IPR023175 -
Vvi19g1020 142 Pfam Vta1 like 47 109 IPR039431 -
Vvi19g1020 142 MobiDBLite consensus disorder prediction 1 35 - -
Vvi19g1020 142 MobiDBLite consensus disorder prediction 7 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1020 Vvi-Chr19 13989275 13992321 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1020 9 141 Glycosyltransferase AT3G14570 56.391 3.73e-43 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1020 K11000 - vvi:100248372 273.863