Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1011 ATGATTTTGTGTGGGAGTCCTCATCCTTTTTTTGATAGAAAAACATCCATCGTGAGTAAGTACATTAGCGAATTGGATGATTGTGAGAAGCTATTTATTCCAATGTGTGACGATTGCCTCGGTCATTGGTATCTGTGCGTCATTGACTTCAAAAACTCTCATATCCAAATTTTGAATTCATTGCGATTGAAGAGTCGGGATGAGTTTTGGTTTAAGAGTGTTAAAACAGTGGTTGAATTTTGTCAAACGTTCTTCAAACTGTATGACATGGGGAAAGATGTCTTCTAA 288 0.3681 MILCGSPHPFFDRKTSIVSKYISELDDCEKLFIPMCDDCLGHWYLCVIDFKNSHIQILNSLRLKSRDEFWFKSVKTVVEFCQTFFKLYDMGKDVF* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1011 95 Pfam Ulp1 protease family, C-terminal catalytic domain 25 78 IPR003653 GO:0006508|GO:0008234
Vvi19g1011 95 Gene3D Adenoviral Proteinase; Chain A 9 93 - -
Vvi19g1011 95 SUPERFAMILY Cysteine proteinases 18 84 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1011 Vvi-Chr19 13632902 13633389 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1011 - K08592 vvi:104881229 182.956