Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0980 ATGAGGCAAATTAGCAGTGAAGTCAATGCATTGTTGAAGGGTATCATTGAGAAAAGAGAGAAGGCAATGAAAGCTGGCGAAACTGCTAATGATGATTTATTAGGTCTACTAATGGAATCCAACTACAGAGAAATGCAAGAAAATGATGAGAGGAAGAATGTTGGAATGAGCATCAAAGATGTCATTGAGGAGTGTAAGCTATTCTACCTTGCTGGCCAAGAGACTACCTCGGTTTTACTTCTGTGGACAATGGTTCTATTAAGCAAACATTCAAACTGGCAAGCTTGCGCAAGGGAAGAGGTTTTACGGGTTTTTGGTAATAAAAAACCAGATGGCGATGACTTAAATCACCTCAAAATTGTTACAATGATTTTTCATGAGGTCCTTAGGTTATATCCACCAGCACCCATGCTCACACGAGCTGTTTTTGCCGACAGCCAAGTGGGAGGATTGTATTTACCAGATGGAGTGCAGATCGCTTTGCCAATCCTCCTAATTCACCACGATGATAAAATTTGGGGAGACGATGCAAAGGAATTCAACCCGGGGAGATTTTCAGAAGGAGTTTCAAAGGCAGCAAAGAGCCAAGTTTCATTTTTTCCATTTGGTTATGGTCCTCGGATATGCGTTGGACAAAATTTTGCAATGATGGAAGCAAAAATGGCTTTGGCAATGATCTTACAACGTTTCTCATTTGAACTTTCCCCATCCTATGCTCATGCACCTATTAGTCTTACAACTATGCAACCCCAACATGGTGCACACCTGATTTTACATGGACTTTAG 786 0.4109 MRQISSEVNALLKGIIEKREKAMKAGETANDDLLGLLMESNYREMQENDERKNVGMSIKDVIEECKLFYLAGQETTSVLLLWTMVLLSKHSNWQACAREEVLRVFGNKKPDGDDLNHLKIVTMIFHEVLRLYPPAPMLTRAVFADSQVGGLYLPDGVQIALPILLIHHDDKIWGDDAKEFNPGRFSEGVSKAAKSQVSFFPFGYGPRICVGQNFAMMEAKMALAMILQRFSFELSPSYAHAPISLTTMQPQHGAHLILHGL* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0980 261 Pfam Cytochrome P450 3 244 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0980 261 SUPERFAMILY Cytochrome P450 2 258 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0980 261 Gene3D Cytochrome P450 1 261 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0980 261 PANTHER CYTOCHROME P450 FAMILY MEMBER 1 254 - -
Vvi19g0980 261 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 202 211 IPR017972 GO:0005506|GO:0016705
Vvi19g0980 261 PRINTS P450 superfamily signature 200 209 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0980 261 PRINTS P450 superfamily signature 123 134 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0980 261 PRINTS P450 superfamily signature 209 220 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0980 261 PRINTS P450 superfamily signature 71 88 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0980 261 PRINTS E-class P450 group I signature 80 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0980 261 PRINTS E-class P450 group I signature 122 140 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0980 261 PRINTS E-class P450 group I signature 60 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0980 261 PRINTS E-class P450 group I signature 209 232 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0980 261 PRINTS E-class P450 group I signature 199 209 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0980 261 PRINTS E-class P450 group I signature 163 187 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0980 Vvi-Chr19 12661179 12662567 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0980 1 261 Cytochrome P450 AT3G14610 63.740 7.30e-121 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0980 - - vvi:100256575 525.783