Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0949 ATGGCTTCTTCTTCTTCACTACGTCCTAGAAATGACAACAGCGCAAACAGTCCTAAAAACAGTAACATCGACATTGCTGAGCATGATGAGGAGTTTACTGCAGTGGCTTCCTCTTCATTACCATCTCGCCCAAACAATGCTTCAGTCTCTTCCCCTTCATCTTTGCAAAGAACTAGCAGCTCCGATATAATCTATTACTCGGAACTGTACAAAGCTGTGGTCAATGGTGACTGGGAAAGTGCTTCAGAATTATTGGGGCGTGAGCCACAATTATTGGACGCCCCGATCGGAATAGATAATTCAACAATGCTTCACATAGCAGTTGAGTTAGGAGAGGCCAGAATGGGTTTCGTGGAGCAGTTGGTTGACTTTATGCCAATAGATAAACTGGCTCTGAAGGATTCTGATGGCGCCACTGCCCTTTTCAACGCTGTAAGGGCTGACAATATAAAAGCAGTCAAGTTGTTAGTGAACAAAAGCCCAAGCTTGCTCAATACCTGCAACCAAGGCAATTTAGTGCCTCTTCACAGCGCTCTTAGGTATGGTCATAAAGAGCTGACTTTATATTTATTAAGCGTCACCAGAGATGATGTAGATCCAAGTCCTTTCGCAGACAAGCCTGGAGTCATACTTCTGCACAGAGCACTAATGGTGGGGTTTCATGATGTAGCACTGTATCTGGTTAAACGTTTTCCTGACCTTGCCACATGCAATTTCGGTGATGCTAAAGATTCTTATGATGATAAAGATTCTGATGATGTTAAAACCCCTTTGACGGTATTGGCTAAAAGGCCTTGGGCTTTCCGAAGTGGAAATCGCTTCGAGTTATGGGAACTCATAATATATCACTGTTAG 855 0.4351 MASSSSLRPRNDNSANSPKNSNIDIAEHDEEFTAVASSSLPSRPNNASVSSPSSLQRTSSSDIIYYSELYKAVVNGDWESASELLGREPQLLDAPIGIDNSTMLHIAVELGEARMGFVEQLVDFMPIDKLALKDSDGATALFNAVRADNIKAVKLLVNKSPSLLNTCNQGNLVPLHSALRYGHKELTLYLLSVTRDDVDPSPFADKPGVILLHRALMVGFHDVALYLVKRFPDLATCNFGDAKDSYDDKDSDDVKTPLTVLAKRPWAFRSGNRFELWELIIYHC* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0949 284 Gene3D - 50 264 IPR036770 -
Vvi19g0949 284 MobiDBLite consensus disorder prediction 1 22 - -
Vvi19g0949 284 Pfam Ankyrin repeats (3 copies) 69 159 IPR002110 GO:0005515
Vvi19g0949 284 MobiDBLite consensus disorder prediction 35 55 - -
Vvi19g0949 284 SMART ANK_2a 207 236 IPR002110 GO:0005515
Vvi19g0949 284 SMART ANK_2a 170 200 IPR002110 GO:0005515
Vvi19g0949 284 SMART ANK_2a 99 131 IPR002110 GO:0005515
Vvi19g0949 284 SMART ANK_2a 136 165 IPR002110 GO:0005515
Vvi19g0949 284 PANTHER - 55 204 - -
Vvi19g0949 284 MobiDBLite consensus disorder prediction 1 55 - -
Vvi19g0949 284 SUPERFAMILY Ankyrin repeat 69 229 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0949 Vvi-Chr19 11827806 11830931 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0949 36 236 Miscellaneous Gene Families AT5G60070 26.667 2.66e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0949 - - vvi:104877647 456.062