Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0941 ATGGACAATGGTCCTGCTAAGCGAGCATCCAAACTGGCAAGCTTGTGCAAGAGAAGAGGTTTTACAGTTTTTGGGAATAAAAAACCGGAAGCTGATGGATTAAATCACCTAAAAATTGTTACCATGATTTTTCATGAGGTTCTTAGGTTATACCCACTAGTAGCAATGCTTCATAGAGCTGTTTATAAGGACACTCAAGTGGGAGACATGTGTTTTCCAGTTGGAGTGCAGGTCGTGTTGCCCACCATCCTAGTTCACCATGATCATGAAATTTGGGGGGATGATGCAAAGGAGTTTAATCCAAAGAGGTTTGCAGAAGCAGTTTTGAAGGCAACAAAAAACCAAGTTTCATTTTTCCCATTTGGTTGGGGTCCTCGGGTATGCATTGGACAAAATTTTGCAATGATGGAGGCAAAAATAGCTTTGGCAATGATCTTACAACACTTCTCATTTGAACTTTCGCCATCCTATGCTCATGCTCCCTTCAGTATCCTAACTATGCAACCCCAATATGGTGCACACTTGATTCTACGTGGACTTCAGTGTTGA 549 0.4171 MDNGPAKRASKLASLCKRRGFTVFGNKKPEADGLNHLKIVTMIFHEVLRLYPLVAMLHRAVYKDTQVGDMCFPVGVQVVLPTILVHHDHEIWGDDAKEFNPKRFAEAVLKATKNQVSFFPFGWGPRVCIGQNFAMMEAKIALAMILQHFSFELSPSYAHAPFSILTMQPQYGAHLILRGLQC* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0941 182 Gene3D Cytochrome P450 16 180 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0941 182 PRINTS P450 superfamily signature 42 53 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0941 182 PRINTS P450 superfamily signature 119 128 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0941 182 PRINTS P450 superfamily signature 128 139 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0941 182 Pfam Cytochrome P450 23 157 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0941 182 PRINTS E-class P450 group I signature 41 59 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0941 182 PRINTS E-class P450 group I signature 128 151 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0941 182 PRINTS E-class P450 group I signature 82 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0941 182 PRINTS E-class P450 group I signature 118 128 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0941 182 PANTHER CYTOCHROME P450 FAMILY MEMBER 21 173 - -
Vvi19g0941 182 SUPERFAMILY Cytochrome P450 23 178 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g0941 182 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 121 130 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0941 Vvi-Chr19 11542512 11543471 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0941 23 180 Cytochrome P450 AT3G14680 62.025 2.93e-74 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0941 - - vvi:100265207 319.316