Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0918 ATGCAGAGGAGGTACGTTGCTGTGAGAGGGGCGTCTCTTGCAGGGGGTGCTTTTCAGAGTTGGTTAGGAGATATTTTGGAGAGCAGGCTGCTTTTGGAGGCTGCCAGCAGGAGGGGAAGGAAGAGAGCTTCAGAGAAGAAAACCTGGGGAGCTTGCTGGTCCAAGGAGGGAAACGTAATGTGCATGAATGGATATTTTATGAAAGAAGCTTTCCTATTCAATGGTGACCCGGGCATTGTGGGTATTTATTCTGGTTTCACTAGTTTTAGCATCCCAGAGGCACTGAAACAAGCTACTGGCAATCATGCTGCAGAGGAATTAGGTAAACAGGTTCATGGGTATATGACGAAAATTGGGTTTGACCCTTCCTCATTCGCATTGGCTGCTGTGGGCATTTTCGTCAGCACTGTCGATCCTCTGAAGGAACTCCCTTTTGTTATAGCCAATACTGTCCTCTCTATTCTTGCAGTTGACTACCCAGTCGACAAAGCTTCTTGCTATGTCTTAGATGATGGATCTTCTATGCTGACATTTGAAGCTCTGTCTGAAACTTCAGAGTTTGCAAGGAAATGGGTTCTTTTCTGCAAGAAATATGGCTATCTTGCACTTGACAGGATTGACTTCAAATGGCCTGGCAGCTGCTCTATTGATTCCATAGTAAGGGTGGTTGGGTTGAGAACTGTCATTGCTGAAACCGAACTTGAGCAGAAAGTGGATGATCCTAATGGTGTCATGCTAGATGAAAACTGTCAAAATTCTAATTCTAAAACCACTGTCTCATACCCCATGCAAACATACCCATTTCTTCACTACCTTTCTCTCTCTACACCGTCACCCCAAACCCACTCAAACTCATCACCACTCACGCTCATGCGTTCACTCCGCACACTCACATCTTCACTCTTAAATTCATGTCTCATACCTACTGCCCACATATCCATCACATTACCTCCATTCATTACACCCACCCATCAAACCCATTCCACATATGCCGCTGCAACCACCATTGCCTCCACATCCAATCCTTCCATCCATGCCAGCTTTCCAACACCTATACTCCACAAATCAGCACCTCAGGTGGCATTATTTTCTGCTCGGGGACCCAATATAAGAGATTTCAACTTCCAAGATGTGGATCTTCTCAAACTAGATATTCTAGCTCCAGGTTCTCTCATTTGGGCTGCCTGGTCTCCAAATGGAACGGATGAGGCCAATTATGTTGGAGAAGGGTTTGCAATGGTCTCCGGAACTAGCATGGCTGCACCACATATAGCTGGAATAGCTGCCCTACAGAAGGACCACTCTCATCTTGTTTGCTCTGGATCTGACTTGGATGGTGCCAGCCTTAGAGTGGGGTTGGAAGTTTTAGTCTCGAGGCCACCCTCTGATCTTGATATGTTTGTGAAGCTCGAACAACTTGATTTTGATGATATGGAAGATTGGCGTCAATACCAAGACATCTAA 1464 0.4577 MQRRYVAVRGASLAGGAFQSWLGDILESRLLLEAASRRGRKRASEKKTWGACWSKEGNVMCMNGYFMKEAFLFNGDPGIVGIYSGFTSFSIPEALKQATGNHAAEELGKQVHGYMTKIGFDPSSFALAAVGIFVSTVDPLKELPFVIANTVLSILAVDYPVDKASCYVLDDGSSMLTFEALSETSEFARKWVLFCKKYGYLALDRIDFKWPGSCSIDSIVRVVGLRTVIAETELEQKVDDPNGVMLDENCQNSNSKTTVSYPMQTYPFLHYLSLSTPSPQTHSNSSPLTLMRSLRTLTSSLLNSCLIPTAHISITLPPFITPTHQTHSTYAAATTIASTSNPSIHASFPTPILHKSAPQVALFSARGPNIRDFNFQDVDLLKLDILAPGSLIWAAWSPNGTDEANYVGEGFAMVSGTSMAAPHIAGIAALQKDHSHLVCSGSDLDGASLRVGLEVLVSRPPSDLDMFVKLEQLDFDDMEDWRQYQDI* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0918 487 Gene3D - 326 353 - -
Vvi19g0918 487 SUPERFAMILY Subtilisin-like 325 434 IPR036852 GO:0004252|GO:0006508
Vvi19g0918 487 Gene3D Peptidase S8/S53 domain 354 433 IPR036852 GO:0004252|GO:0006508
Vvi19g0918 487 Pfam Subtilase family 325 432 IPR000209 GO:0006508|GO:0008236
Vvi19g0918 487 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 114 199 - -
Vvi19g0918 487 Pfam Cellulose synthase 130 198 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi19g0918 487 ProSitePatterns Serine proteases, subtilase family, serine active site. 416 426 IPR023828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0918 Vvi-Chr19 10837858 10842018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0918 351 432 Subtilisin-like Serine Gene Family AT4G30020 85.366 6.09e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0918 - - vri:117925010 164.081