Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0916 ATGCTGGGTTCATTCAGTTCTTCCCATGAAGAAGAAGAGGACCCATCGGATCTGCAGTATCAGATTCCACAGCCATCACGTGCGTTCTCCCCTCCAGCAATCCAAATGCGGCAATTACTTATAAGTTGCGCCGAGCTTGTCTCCCAATCTGACTTCTCCGCCGCTCGCCGCCTCCTCTCCATCCTCTCCTCCAACTCCTCTCCTTTTGGTGACTCAACGGAGCGCTTGGTCCACCAATTTTCCGCTGCCCTCTCCCTCCGCCTCAGTCGCTATGCCACACCAGCTACTAGTAGTGGAGCCATGTCTGCTAGTGCTAATACTGCTGCTGCAGATTCTGAGGCGTTTCATTCCACGTATCTCTCCCTGAACCAAATAACCCCATTCATCAGGTTCAGTCAGCTCACTGCCAATCAAGCTATTCTGGAAGCCATTGAAGGGCAAAGGGCGATCCACATCCTGGACTTTGACATCATGCACGGGGTGCAATGGCCCCCTCTGATGCAGGCCATAGCTGAGCGTTGTGGCAACCTTCACCCTCCTCCCATGATCCGAATCACTGGAACTGGCGAAGATTTGGGTATACTCCAGAGAACTGGCGACCGCCTTCTGAAATTTGCGCAGTCCCTTGGTCTCAAATTCCAATTCCACCCACTTCTACTCCGCAATGACCCTACATCTGTGCCTCTCTATCTTCCCTCTGCGCTTCAACTACTCCCTGATGAAACTCTTGCAGTGAATTGTGTGCTTTATCTGCACAGGCTCCTCAAGGACGATTCCCGTGATCTACGCCTCTTCCTCCACAAAATCAAGGCCATGGAACCTAAGGTGGTGACCATCGCCGAGAGAGAAGCCAATCATAATCATCCACTTTTCTTGCAGAGATTCGTGGAGGCCTTGGACCACTACACAGCCGTGTTCGATTCTCTCGAGGCGACGCTGCCACCTACCAGTCGGGAGAGGCTGGCCGTTGAGCGAATATGGTTTGGAAGAGAAATCGTAGACATCGTGTCGGCAGAGGGAGACAACAGAAGGGAACGCCACGAGAGGTTCGAGTCGTGGGAGGTGATGCTGAGAAGCTCCGGCTTCTCAAACGTTCCCCTGAGCCCTTTTGCTCTGTCGCAGGCCAAGCTCCTCCTGAGGCTCCATTATCCTTCTGAAGGTTACCGGCTGCAGATTATCAACGATTCTTTCTTCCTAGGTTGGCAAAATCAAGCTCTTTTCTCCGTTTCTTCATGGCACTAA 1242 0.5242 MLGSFSSSHEEEEDPSDLQYQIPQPSRAFSPPAIQMRQLLISCAELVSQSDFSAARRLLSILSSNSSPFGDSTERLVHQFSAALSLRLSRYATPATSSGAMSASANTAAADSEAFHSTYLSLNQITPFIRFSQLTANQAILEAIEGQRAIHILDFDIMHGVQWPPLMQAIAERCGNLHPPPMIRITGTGEDLGILQRTGDRLLKFAQSLGLKFQFHPLLLRNDPTSVPLYLPSALQLLPDETLAVNCVLYLHRLLKDDSRDLRLFLHKIKAMEPKVVTIAEREANHNHPLFLQRFVEALDHYTAVFDSLEATLPPTSRERLAVERIWFGREIVDIVSAEGDNRRERHERFESWEVMLRSSGFSNVPLSPFALSQAKLLLRLHYPSEGYRLQIINDSFFLGWQNQALFSVSSWH* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0916 413 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 35 409 IPR005202 -
Vvi19g0916 413 Pfam GRAS domain family 36 412 IPR005202 -
Vvi19g0916 413 ProSiteProfiles GRAS family profile. 27 413 IPR005202 -
Vvi19g0916 413 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0916 Vvi-Chr19 10747971 10749212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0916 1 412 GRAS Transcription Factor Family AT1G55580 52.796 2.36e-135 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi19g0916 GRAS 3.9e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0916 - - vvi:100261722 763.066