Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0914 ATGGGACTGTTGGAGACTGAGCAGAAGCAGAGCAAGATGGTGGGTGTTGGCTTGGAGGGCCTCCCAACCACCCTCATTAACGAAATAATAGTGAAGCTGGACACGGAGACACTCTGCTCTGTAGCTTGCGTCTCCCGAGCTCTTCGCTTCGCCGTCTCTGAAGCTCTTCCTCTTTCTTCTTCTCTTGATCTCTCTGCATTTTCCCCAGATGCCCAGACCCTGAATCACCTTGTTTCCCGGTGCAAAGGCCTCAAGATTCTCACCCTTGATTGCCTCCGCCTGGATGATTCTTCCATCACCATTTTTCTTGGTCCACATATCCAGGAATTGAATTTGTTGAGATGTTCCTTGCTGTCATATCAACTTCTTCGTTCCATTGGCGAAAGCTTGCCCAATTTAAGGTTGCTCACACTAGAACTGTCATACTGGGACTTGCCTGAAGTGTTCAACAGGAATCTTGTACAAATGCTTACGGGTTGCTCTTACTTGGAGTCTCTATGTCTAAAGATTCGAGGGGCAGAATTTGATGCCACTTTTTTCCGGTCCATTCAACATTTCCTGCCCAAAACTGTTAAAATCTTGAAGTTGCAGCCAGTGCTTGAACAAGATGTGATTCGTTTTATACATGAGCTCAGAGTTAACCGGAATATTTTGGATACAGCTGAATTTGGAATTCCCTTCTCTCCAGCATCCCCTGGTTTCAAATTGCAGTCCTTATCTCTTGTCTTAGATATCATATCCGATGAACTTATTAGTTCCATCACCGACTCTCTTCCGTTTCTGATTGAGCTTCATCTTGAAGATAGACCAAGCAAAGAACCATCACCATTCCATGATTTGACTAACAGTGGGCTTCAGTCTTTGAGGTTTTGTCGTCATTTAACTGACATCTCTCTTATACGAAGTAGACACAACCTCCCAGTATATTTCAAAAGGATAAATGATATGGGCATGTTTCTCCTTTCTGAGGGCTGCAGGCTCCTAGAGTCGGTGAGACTTGGTGGGTTTTGTAGAGTTAGTGATGCTGGTTTTGCATCAATTCTGCACTCTTGTTGGCACCTAAAAAAATTTGAAGTTCGTAATGCCTTACTTCTGTCTGATCTGGCCTTCCATGATCTCACTGGAGCCCCCTGTTCCCTGGTTGAGGTGAAATTGTCATCCTGTAATCTTATAACTAGTGAAACCGTTCATAAAATGGCCTCTTCCAGAAGGTTGGAGGTGCTTGACCTCTTTGGCTGCAAGAGCATAGCTGACTCATCTCTCAGCTCCATTACATGTCTTAATAAACTAACTACATTGAATCTTGGAGGTGCTGATGTTACAGACAGAGGTTTATCTGTTCTCAGTCAGGGGTATTCACCCATTTCACATTTGTGCCTTCGAGGCTGTAAGAGGGTAACTGACAAAGGGGTTTCTCTTTTGTTTCATGGCTGTGGAGTGATTAGTAAAACATTGACAGCACTGGATTTAGGCCACATGCCAGGGATATCAGATAAAGCCATTCTCACAATTGCTGCAGTTGGTACAGGGATTACTGAATTGTGCATTAGGTATTGTTTCTATGTGACTGATTCTTCAGTGGAAGCATTGGCCACAAAAAGAAGGCTTCAGGATGGAAGGAAACCACTTCGGAAGCTAGATCTCTTTCACTGCACTGGGTTGTCTGTTAAATCATTAGAGTCATTGAAGAGGCCTTTCTTTCAAGCTCTAAAGTGGATTGGTCTTGGACGCACTTGTTTGAGTGGTAAAGCAAATGAAATCTTGAATGAACGCCCCTGGCTGACTCTCTGTTTGGATGGCTGTGAAATGGGATGTCATGATGGGTGGCACTTCCATAGACCAGAGACCAGAGACCATTAA 1860 0.4414 MGLLETEQKQSKMVGVGLEGLPTTLINEIIVKLDTETLCSVACVSRALRFAVSEALPLSSSLDLSAFSPDAQTLNHLVSRCKGLKILTLDCLRLDDSSITIFLGPHIQELNLLRCSLLSYQLLRSIGESLPNLRLLTLELSYWDLPEVFNRNLVQMLTGCSYLESLCLKIRGAEFDATFFRSIQHFLPKTVKILKLQPVLEQDVIRFIHELRVNRNILDTAEFGIPFSPASPGFKLQSLSLVLDIISDELISSITDSLPFLIELHLEDRPSKEPSPFHDLTNSGLQSLRFCRHLTDISLIRSRHNLPVYFKRINDMGMFLLSEGCRLLESVRLGGFCRVSDAGFASILHSCWHLKKFEVRNALLLSDLAFHDLTGAPCSLVEVKLSSCNLITSETVHKMASSRRLEVLDLFGCKSIADSSLSSITCLNKLTTLNLGGADVTDRGLSVLSQGYSPISHLCLRGCKRVTDKGVSLLFHGCGVISKTLTALDLGHMPGISDKAILTIAAVGTGITELCIRYCFYVTDSSVEALATKRRLQDGRKPLRKLDLFHCTGLSVKSLESLKRPFFQALKWIGLGRTCLSGKANEILNERPWLTLCLDGCEMGCHDGWHFHRPETRDH* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0914 619 Gene3D Ribonuclease Inhibitor 401 597 IPR032675 -
Vvi19g0914 619 SUPERFAMILY F-box domain 16 54 IPR036047 GO:0005515
Vvi19g0914 619 Pfam Leucine Rich repeat 428 449 IPR001611 GO:0005515
Vvi19g0914 619 Gene3D Ribonuclease Inhibitor 47 400 IPR032675 -
Vvi19g0914 619 SUPERFAMILY RNI-like 313 580 - -
Vvi19g0914 619 PANTHER UNCHARACTERIZED 56 410 - -
Vvi19g0914 619 SUPERFAMILY RNI-like 60 299 - -
Vvi19g0914 619 SMART LRR_CC_2 378 402 IPR006553 -
Vvi19g0914 619 SMART LRR_CC_2 104 129 IPR006553 -
Vvi19g0914 619 SMART LRR_CC_2 508 533 IPR006553 -
Vvi19g0914 619 SMART LRR_CC_2 325 350 IPR006553 -
Vvi19g0914 619 SMART LRR_CC_2 482 507 IPR006553 -
Vvi19g0914 619 SMART LRR_CC_2 540 565 IPR006553 -
Vvi19g0914 619 SMART LRR_CC_2 427 451 IPR006553 -
Vvi19g0914 619 SMART LRR_CC_2 452 477 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0914 Vvi-Chr19 10694872 10702230 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0914 - - vvi:100244592 1193.72